parseSingleSite: Parse the simple site

In hongzhonglu/Yeastspot3D: Mutation mapping analysis with protein 3D structure for yeast

Description

Function to parse the site annotation with no ";"

Usage

parseSingleSite(site_dataframe, site_type0)

Arguments

site_dataframe	A dataframe with the active site annotation from UniProt database
site_type0	The site type classification by UniProt database

Value

A dataframe with the genename and active site information

Examples

# Load the active site annotation from UniProt database
data('protein_active_site_sce')
metal_site <- select(sce_site00,Entry, Metal_binding) %>% filter(.,!is.na(Metal_binding))
metal_site1 <- parseSingleSite(metal_site, site_type0 = 'METAL')

hongzhonglu/Yeastspot3D documentation built on March 28, 2020, 6:06 p.m.