parseMutipleSite: Parse the complex site

In hongzhonglu/Yeastspot3D: Mutation mapping analysis with protein 3D structure for yeast

Description

Function to parse the site annotation seperated with ";"

Usage

parseMutipleSite(site_dataframe, site_type0, single_site = TRUE)

Arguments

site_dataframe	A dataframe with the active site annotation from UniProt database
site_type0	The site type classification by UniProt database
single_site	A logical vector

Value

A dataframe with the genename and active site information

Examples

# Load the active site annotation from UniProt database
data('protein_active_site_sce')
Nucleotide_binding_site <- select(sce_site00,Entry, Nucleotide_binding) %>% filter(.,!is.na(Nucleotide_binding))
head(Nucleotide_binding_site)
Nucleotide_binding_site1 <- parseMutipleSite(Nucleotide_binding_site, site_type0 = "NP_BIND", single_site = FALSE)

hongzhonglu/Yeastspot3D documentation built on March 28, 2020, 6:06 p.m.