checkTanslatedProtein: Protein sequence quality check
In hongzhonglu/Yeastspot3D: Mutation mapping analysis with protein 3D structure for yeast
Description
Usage
Arguments
Value
Examples
View source: R/basic_function_in_cluster_analysis.R
Description
Check whether the translated protein from CDS is equal to the protein sequence
from the sgd database, if they are equal, the original cds sequence and protein sequence is consistent in
our program
Usage
1
checkTanslatedProtein(gene_seq_inf)
Arguments
gene_seq_inf
A gene feature dataframe, each row contains the gene annotation information, like the coordinates, the cds sequence
Value
A list contains the gene with right translated protein and the gene with wrong translated protein
Examples
1
2
data('gene_feature0')
checkTanslatedProtein(gene_feature0)
hongzhonglu/Yeastspot3D documentation built on March 28, 2020, 6:06 p.m.
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Description Usage Arguments Value Examples
View source: R/basic_function_in_cluster_analysis.R
Description
Check whether the translated protein from CDS is equal to the protein sequence from the sgd database, if they are equal, the original cds sequence and protein sequence is consistent in our program
Usage
1 | checkTanslatedProtein(gene_seq_inf)
|
Arguments
gene_seq_inf |
A gene feature dataframe, each row contains the gene annotation information, like the coordinates, the cds sequence |
Value
A list contains the gene with right translated protein and the gene with wrong translated protein
Examples
1 2 | data('gene_feature0')
checkTanslatedProtein(gene_feature0)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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