getGeneName: Get gene for each SNP

In hongzhonglu/Yeastspot3D: Mutation mapping analysis with protein 3D structure for yeast

Description

Get the gene name based on the chr name and mutation position, which can be used for the SNP annotation

Usage

getGeneName(chr, mutated_positions, gene_annotation = gene_feature0)

Arguments

chr	A string containing chromsome name
mutated_positions	A number containing the mutated position
gene_annotation	A dataframe with detailed gene annotation for sec-s288

Value

A string represents gene name

Examples

data('gene_feature0')
getGeneName(chr='chrI',mutated_positions=120983,  gene_annotation = gene_feature0)

hongzhonglu/Yeastspot3D documentation built on March 28, 2020, 6:06 p.m.