pdb.Sequence: Get PDB residue sequence

In hongzhonglu/Yeastspot3D: Mutation mapping analysis with protein 3D structure for yeast

Description

Extract the residue sequence from both experimental and homology pdb files Please library(bio3d) firstly when using this function

Usage

pdb.Sequence(pdbdir, pdbid)

Arguments

pdbdir	Directory of a pdb file
pdbid	Name of the pdb file, like '6cp6.pdb'

Value

A list contains the residues sequence of each chain in a PDB file

Examples

pdbdir0 <-  "xx/data/6cp6.pdb"
pdb.Sequence(pdbdir=pdbdir0, pdbid='6cp6.pdb')

hongzhonglu/Yeastspot3D documentation built on March 28, 2020, 6:06 p.m.