API for huerqiang/GeoTcgaData
Processing Various Types of Data on GEO and TCGA
| Global functions | |
|---|---|
| GSE66705_sample2 | Man page |
| Merge_methy_tcga | Man page Source code |
| SNP_QC | Man page Source code |
| array_preprocess | Man page Source code |
| cal_mean_module | Man page Source code |
| cluster_array | Man page Source code |
| combine_pvalue | Man page Source code |
| countToEffCounts_internal | Source code |
| countToFpkm | Man page Source code |
| countToFpkm_internal | Source code |
| countToTpm | Man page Source code |
| countToTpm_internal | Source code |
| differential_CNV | Man page Source code |
| differential_RNA | Man page Source code |
| differential_SNP | Man page Source code |
| differential_SNP_GEO | Man page Source code |
| differential_SNP_tcga | Man page Source code |
| differential_array | Man page Source code |
| differential_limma | Man page Source code |
| differential_methy | Man page Source code |
| fpkmToCount_internal | Source code |
| fpkmToTpm | Man page Source code |
| fpkmToTpm_internal | Source code |
| geneExpress | Man page |
| gene_ave | Man page Source code |
| gene_cov | Man page |
| get_cpg_annotation | Source code |
| get_geo_array | Man page Source code |
| get_hwe | Source code |
| get_maf | Source code |
| get_methy_df | Source code |
| id_conversion_TCGA | Man page Source code |
| kegg_liver | Man page |
| module | Man page |
| prepare_chi | Man page Source code |
| print.sumlog | Source code |
| print.sumz | Source code |
| profile | Man page |
| repAssign | Man page Source code |
| repRemove | Man page Source code |
| sumlog | Source code |
| sumz | Source code |
| ventricle | Man page |
