Files in huerqiang/GeoTcgaData
Processing Various Types of Data on GEO and TCGA
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/CNV.R
R/Merge_methylation.R
R/RNA_seq.R
R/SNP.R
R/TCGA_id_conversion.R
R/arrayDiff.R
R/calculate_mean_module.R
R/calculate_mean_profile.R
R/data.R
R/fpkm_count_conversion.r
R/metap.R
R/prepareChi.r
R/rep.R
R/sysdata.rda
README.Rmd
README.md
data/GSE66705_sample2.rda
data/geneExpress.rda
data/gene_cov.rda
data/kegg_liver.rda
data/module.rda
data/profile.rda
data/ventricle.rda
docs/news/index.html
docs/reference/arrayDiff.html
docs/reference/index.html
docs/sitemap.xml
inst/extdata/build_data.R
inst/extdata/cnv/00de3/HONGS_p_TCGAb3_75_76_77_NSP_G.txt
inst/extdata/cnv/00e8/MICHE_p_TCGAb_428_429_NS.txt
inst/extdata/cnv/00f9/MINAE_p_TCGA_200_202_203_S.txt
inst/extdata/cnv/0a01/KNELT_p_TCGA_b123_131_S.txt
inst/extdata/methy/0a0b4/jhu-usc.e.H.4.lvl-3.TCGA-13-1405-01A-01D-0460-05.g.txt
inst/extdata/methy/0a0b4/logs/file1.parcel
inst/extdata/methy/0a6b/jhu-usc.e.H.10.lvl-3.TCGA-30-1880-01A-01D-0652-05.g.txt
inst/extdata/methy/0a6b/logs/file2.parcel
inst/extdata/methy/0ae7/jhu-usc.H.8.l.I.TCGA-30-1714-01A-02D-0563-05.g.txt
inst/extdata/methy/0ae7/logs/file3.parcel
inst/extdata/methy/0b32/jhu-usc.e.H.5.l.TCGA-13-1510-01A-02D-0475-05.gdc_hg38.txt
inst/extdata/methy/0b32/logs/file4.parcel
inst/extdata/tcga_cli/at.orl.TCGA-2V-A95S.xml
inst/extdata/tcga_cli/ati.org.TCGA-2Y-A9GT.xml
inst/extdata/tcga_cli/ats.org.TCGA-2Y-A9GS.xml
man/GSE66705_sample2.Rd
man/Merge_methy_tcga.Rd
man/SNP_QC.Rd
man/array_preprocess.Rd
man/cal_mean_module.Rd
man/cluster_array.Rd
man/combine_pvalue.Rd
man/countToFpkm.Rd
man/countToTpm.Rd
man/differential_RNA.Rd
man/differential_SNP.Rd
man/differential_SNP_GEO.Rd
man/differential_SNP_tcga.Rd
man/differential_array.Rd
man/differential_cnv.Rd
man/differential_limma.Rd
man/differential_methy.Rd
man/fpkmToTpm.Rd
man/geneExpress.Rd
man/gene_ave.Rd
man/gene_cov.Rd
man/get_geo_array.Rd
man/id_conversion_TCGA.Rd
man/kegg_liver.Rd
man/module.Rd
man/prepare_chi.Rd
man/profile.Rd
man/repAssign.Rd
man/repRemove.Rd
man/ventricle.Rd
tests/testthat.R
tests/testthat/fpkmToTpm.R
tests/testthat/test_Merge_methy_tcga.R
tests/testthat/test_arrayDiff.R
tests/testthat/test_cal_mean_module.R
tests/testthat/test_countToFpkm.R
tests/testthat/test_countToTpm.R
tests/testthat/test_diff_RNA_ucsc.R
tests/testthat/test_differential_CNV.R
tests/testthat/test_differential_RNA.R
tests/testthat/test_differential_limma.R
tests/testthat/test_gene_ave.R
tests/testthat/test_prepare_chi.R
tests/testthat/test_repAssign.R
tests/testthat/test_repRemove.R
vignettes/.gitignore
vignettes/GeoTcgaData.Rmd
