API for igordot/scooter
Streamlined scRNA-Seq Analysis Pipeline
| Global functions | |
|---|---|
| %>% | Man page |
| .data | Man page |
| add_seurat_assay | Man page Source code |
| as_data_frame_seurat | Man page Source code |
| as_data_frame_seurat_assay | Source code |
| as_data_frame_seurat_reduction | Source code |
| calc_clust_averages | Man page Source code |
| calculate_clusters | Man page Source code |
| calculate_mito_pct | Man page Source code |
| calculate_variance | Man page Source code |
| check_identity_column | Man page Source code |
| cluster_stats_bar | Source code |
| create_color_vect | Man page Source code |
| create_seurat_obj | Man page Source code |
| differential_expression_global | Man page Source code |
| differential_expression_paired | Man page Source code |
| differential_expression_per_cluster | Man page Source code |
| enexpr | Man page |
| enexprs | Man page |
| enquo | Man page |
| enquos | Man page |
| ensym | Man page |
| ensyms | Man page |
| error | Source code |
| expr | Man page |
| exprs | Man page |
| filter_data | Man page Source code |
| filter_data.Seurat | Source code |
| filter_data.default | Source code |
| filter_mat_by_cpm | Source code |
| gather_seurat_objects | Source code |
| geneset_score | Man page Source code |
| get_color_scheme | Man page Source code |
| get_density_diff_table | Source code |
| get_dr_point_size | Man page Source code |
| get_test_counts_matrix | Man page Source code |
| import_mtx | Man page Source code |
| integrate_seurat_log | Source code |
| integrate_seurat_sct | Source code |
| load_sample_counts_matrix | Man page Source code |
| log_normalize_data | Man page Source code |
| max_scores | Source code |
| merge_metadata | Man page Source code |
| merge_metadata.Seurat | Source code |
| merge_metadata.default | Source code |
| normalize_data | Man page Source code |
| normalize_data.Seurat | Source code |
| normalize_data.default | Source code |
| normalize_mat_by_gene | Source code |
| plot_HTO | Source code |
| plot_density_diff | Source code |
| plot_density_split | Source code |
| plot_distribution | Man page Source code |
| plot_distribution.Seurat | Source code |
| plot_distribution.default | Source code |
| plot_qc | Source code |
| plot_scatter | Source code |
| plot_scatter_group | Source code |
| plot_scatter_split | Source code |
| plot_violin | Source code |
| quo | Man page |
| quo_name | Man page |
| quos | Man page |
| rescale_vector | Source code |
| run_dr | Man page Source code |
| run_dr.Seurat | Source code |
| run_dr.default | Source code |
| run_pca | Man page Source code |
| run_tsne | Man page Source code |
| run_umap | Man page Source code |
| save_seurat_counts_matrix | Man page Source code |
| sctransform_data | Man page Source code |
| set_identity | Man page Source code |
| sym | Man page |
| syms | Man page |
| tidyeval | Man page |
| write_message | Man page Source code |
