as_data_frame_seurat: Function to extract data from Seurat object.
In igordot/scooter: Streamlined scRNA-Seq Analysis Pipeline
as_data_frame_seurat R Documentation
Function to extract data from Seurat object.
Description
Function to extract data from Seurat object.
Usage
as_data_frame_seurat(
seurat_obj,
assay = NULL,
slot = NULL,
features = NULL,
reduction = NULL,
metadata = TRUE
)
Arguments
seurat_obj
A Seurat object.
assay
Assay such as RNA.
slot
Slot such as counts. Default is scale.data.
features
Features from assay.
reduction
Character vector of reduction types.
metadata
Boolean. To grab metadata or not
Value
A metadata file merged on cell identifiers.
igordot/scooter documentation built on Nov. 20, 2023, 5:55 a.m.
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| as_data_frame_seurat | R Documentation |
Function to extract data from Seurat object.
Description
Function to extract data from Seurat object.
Usage
as_data_frame_seurat(
seurat_obj,
assay = NULL,
slot = NULL,
features = NULL,
reduction = NULL,
metadata = TRUE
)
Arguments
seurat_obj |
A Seurat object. |
assay |
Assay such as RNA. |
slot |
Slot such as counts. Default is scale.data. |
features |
Features from assay. |
reduction |
Character vector of reduction types. |
metadata |
Boolean. To grab metadata or not |
Value
A metadata file merged on cell identifiers.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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