save_seurat_counts_matrix: Function to write Seurat counts matrix to csv.

In igordot/scooter: Streamlined scRNA-Seq Analysis Pipeline

Function to write Seurat counts matrix to csv.

Description

Function to write Seurat counts matrix to csv.

Usage

save_seurat_counts_matrix(
  seurat_obj,
  proj_name = "",
  label = "",
  out_dir = ".",
  assay = "RNA",
  slot = "data",
  log_file = NULL
)

Arguments

seurat_obj	A Seurat object.
proj_name	Name of the project that will be the prefix of the file name.
label	An optional label for the file.
out_dir	Directory in which to save csv.
assay	The assay within the Seurat object to retrieve data from.
slot	The slot within the Seurat object to retrieve data from.
log_file	A log filename.

Value

A csv file in the out_dir.

igordot/scooter documentation built on Nov. 20, 2023, 5:55 a.m.