calculate_clusters: Run dimensionality reduction, pca, tse, and umap

In igordot/scooter: Streamlined scRNA-Seq Analysis Pipeline

Run dimensionality reduction, pca, tse, and umap

Description

Run dimensionality reduction, pca, tse, and umap

Usage

calculate_clusters(
  pcs,
  num_dim,
  log_file,
  num_neighbors = 30,
  res = NULL,
  algorithm = 3
)

Arguments

pcs	Data.
num_dim	Number of PCs to use for tsne and umap.
log_file	log file.
num_neighbors	Number of neighbors to use for umap.
res	Resolution
algorithm	See Seurat::FindClusters()

Value

.

igordot/scooter documentation built on Nov. 20, 2023, 5:55 a.m.