import_mtx: Read in 10x Genomics Cell Ranger Matrix Market format data.
In igordot/scooter: Streamlined scRNA-Seq Analysis Pipeline
import_mtx R Documentation
Read in 10x Genomics Cell Ranger Matrix Market format data.
Description
Read in 10x Genomics Cell Ranger Matrix Market format data.
Usage
import_mtx(data_path, gene_column = 2, log_file = NULL)
Arguments
data_path
Path to directory that holds the files output from 10x.
gene_column
The column with the gene names.
log_file
Filename for the log file.
Value
Named list of matrices. One matrix for each data type as specified in
the third column of the features.tsv file. As of Oct 3rd 2019, the two options
are 'Gene Expression' and 'Antibody Capture'
igordot/scooter documentation built on Nov. 20, 2023, 5:55 a.m.
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| import_mtx | R Documentation |
Read in 10x Genomics Cell Ranger Matrix Market format data.
Description
Read in 10x Genomics Cell Ranger Matrix Market format data.
Usage
import_mtx(data_path, gene_column = 2, log_file = NULL)
Arguments
data_path |
Path to directory that holds the files output from 10x. |
gene_column |
The column with the gene names. |
log_file |
Filename for the log file. |
Value
Named list of matrices. One matrix for each data type as specified in the third column of the features.tsv file. As of Oct 3rd 2019, the two options are 'Gene Expression' and 'Antibody Capture'
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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