differential_expression_per_cluster: Calculate differentially expressed genes within each...

In igordot/scooter: Streamlined scRNA-Seq Analysis Pipeline

Calculate differentially expressed genes within each subpopulation/cluster

Description

Calculate differentially expressed genes within each subpopulation/cluster

Usage

differential_expression_per_cluster(
  seurat_obj,
  cluster_column,
  group_column,
  test = "wilcox",
  out_path = ".",
  write = TRUE,
  log_file = NULL
)

Arguments

seurat_obj	Gene expression data.
cluster_column	Metadata column specifying the groups to split by.
group_column	Metadata column specifying the groups for differential expressin within each split.
test	Statistical method to use.
out_path	Output path.
write	Boolean to save results to disk.
log_file	log file.

Value

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igordot/scooter documentation built on Nov. 20, 2023, 5:55 a.m.