differential_expression_global: Calculate differential expression for one group versus all

In igordot/scooter: Streamlined scRNA-Seq Analysis Pipeline

Calculate differential expression for one group versus all

Description

Calculate differential expression for one group versus all

Usage

differential_expression_global(
  data,
  metadata,
  metadata_column,
  log_fc_threshold = 0.5,
  min.pct = 0.1,
  test.use = "wilcox",
  out_path = ".",
  write = FALSE,
  log_file = NULL
)

Arguments

data	Gene expression data.
metadata	Metadata.
metadata_column	Column in metadata.
log_fc_threshold	Log fc threshold.
min.pct	Minimum percentage of cells a gene must be expressed in to be tested.
test.use	Test to use.
out_path	output path.
write	Boolean to write or not.
log_file	log file.

Value

.

igordot/scooter documentation built on Nov. 20, 2023, 5:55 a.m.