sctransform_data: SCT normalize data.
In igordot/scooter: Streamlined scRNA-Seq Analysis Pipeline
sctransform_data R Documentation
SCT normalize data.
Description
SCT normalize data.
Usage
sctransform_data(counts, metadata, nfeatures, log_file = NULL)
Arguments
counts
Raw counts.
metadata
Metadata for each cell.
nfeatures
Number of variable features to output.
log_file
A log file.
Value
A named list of the vst output, the final scaled data, and the top variable genes.
igordot/scooter documentation built on Nov. 20, 2023, 5:55 a.m.
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| sctransform_data | R Documentation |
SCT normalize data.
Description
SCT normalize data.
Usage
sctransform_data(counts, metadata, nfeatures, log_file = NULL)
Arguments
counts |
Raw counts. |
metadata |
Metadata for each cell. |
nfeatures |
Number of variable features to output. |
log_file |
A log file. |
Value
A named list of the vst output, the final scaled data, and the top variable genes.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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