run_dr: Run dimensionality reduction, pca, tse, and umap

In igordot/scooter: Streamlined scRNA-Seq Analysis Pipeline

Run dimensionality reduction, pca, tse, and umap

Description

Run dimensionality reduction, pca, tse, and umap

Usage

run_dr(
  data,
  dr_method,
  prefix,
  assay = NULL,
  var_features = FALSE,
  features = NULL,
  graph = NULL,
  num_dim_use = NULL,
  reduction = NULL,
  num_neighbors = NULL,
  num_pcs = NULL,
  ...
)

Arguments

data	Data to use for dimensionality reduction.
dr_method	Dimensionality reduction method.
prefix	.
assay	.
var_features	.
features	.
graph	.
num_dim_use	.
reduction	.
num_neighbors	.
num_pcs	.

Value

list of dimensionality reduced/

See Also

run_pca(), run_tsne(), run_umap()

igordot/scooter documentation built on Nov. 20, 2023, 5:55 a.m.