create_seurat_obj: Create a new Seurat object from a matrix.

In igordot/scooter: Streamlined scRNA-Seq Analysis Pipeline

Create a new Seurat object from a matrix.

Description

Create a new Seurat object from a matrix.

Usage

create_seurat_obj(
  counts_matrix,
  assay = "RNA",
  min_cells = 1,
  min_genes = 1,
  log_file = NULL,
  project = "proj"
)

Arguments

counts_matrix	A matrix of raw counts.
assay	Seurat assay to add the data to.
min_cells	Include genes/features detected in at least this many cells.
min_genes	Include cells where at least this many genes/features are detected.
log_file	Filename for the logfile.
project	Project name for Seurat object.

Value

Seurat object.

igordot/scooter documentation built on Nov. 20, 2023, 5:55 a.m.