Files in igordot/scooter
Streamlined scRNA-Seq Analysis Pipeline
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.gitignore
DESCRIPTION
LICENCE
LICENSE.md
NAMESPACE
R/cluster.R
R/de.R
R/dimentionality-reduction.R
R/filter.R
R/functions-unprocessed.R
R/geneset_score.R
R/import.R
R/integration.R
R/normalize.R
R/plots-dr.R
R/plots.R
R/test-data.R
R/utils-pipe.R
R/utils-tidy-eval.R
R/utils.R
R/wrappers.R
R/z-scooter-global.R
README.md
_pkgdown.yml
inst/extdata/HTO.csv
inst/extdata/HTO.tsv
inst/extdata/import_matrix_counts.rds
inst/extdata/outs/filtered_feature_bc_matrix/barcodes.tsv.gz
inst/extdata/outs/filtered_feature_bc_matrix/features.tsv.gz
inst/extdata/outs/filtered_feature_bc_matrix/matrix.mtx.gz
inst/extdata/pbmc.txt
inst/extdata/scrna-10x-scooter.R
inst/extdata/scrna-10x-seurat-2.R
inst/extdata/scrna-10x-seurat-3.R
man/add_seurat_assay.Rd
man/as_data_frame_seurat.Rd
man/calc_clust_averages.Rd
man/calculate_clusters.Rd
man/calculate_mito_pct.Rd
man/calculate_variance.Rd
man/check_identity_column.Rd
man/create_color_vect.Rd
man/create_seurat_obj.Rd
man/differential_expression_global.Rd
man/differential_expression_paired.Rd
man/differential_expression_per_cluster.Rd
man/filter_data.Rd
man/geneset_score.Rd
man/get_color_scheme.Rd
man/get_dr_point_size.Rd
man/get_test_counts_matrix.Rd
man/import_mtx.Rd
man/load_sample_counts_matrix.Rd
man/log_normalize_data.Rd
man/merge_metadata.Rd
man/normalize_data.Rd
man/pipe.Rd
man/plot_distribution.Rd
man/run_dr.Rd
man/run_pca.Rd
man/run_tsne.Rd
man/run_umap.Rd
man/save_seurat_counts_matrix.Rd
man/sctransform_data.Rd
man/set_identity.Rd
man/tidyeval.Rd
man/write_message.Rd
scooter.Rproj
tests/testthat.R
tests/testthat/test-dim-red.R
tests/testthat/test-external-data.R
tests/testthat/test-geneset-score.R
tests/testthat/test-import.R
tests/testthat/test-plots.R
tests/testthat/test-utils.R
