tests/testthat/_snaps/graphs.md
In insightsengineering/hermes: Preprocessing, analyzing, and reporting of RNA-seq data
draw_libsize_hist works as expected
Code
ggplot2::layer_data(result)
Output
y count x xmin xmax density ncount ndensity flipped_aes
1 3 3 4675339 4529234 4821443 5.133318e-07 0.6 0.6 FALSE
2 4 4 4967547 4821443 5113652 6.844424e-07 0.8 0.8 FALSE
3 3 3 5259756 5113652 5405860 5.133318e-07 0.6 0.6 FALSE
4 5 5 5551965 5405860 5698069 8.555530e-07 1.0 1.0 FALSE
5 0 0 5844173 5698069 5990278 0.000000e+00 0.0 0.0 FALSE
6 2 2 6136382 5990278 6282486 3.422212e-07 0.4 0.4 FALSE
7 2 2 6428591 6282486 6574695 3.422212e-07 0.4 0.4 FALSE
8 0 0 6720799 6574695 6866904 0.000000e+00 0.0 0.0 FALSE
9 0 0 7013008 6866904 7159112 0.000000e+00 0.0 0.0 FALSE
10 1 1 7305217 7159112 7451321 1.711106e-07 0.2 0.2 FALSE
PANEL group ymin ymax colour fill linewidth linetype alpha
1 1 -1 0 3 NA blue 0.5 1 NA
2 1 -1 0 4 NA blue 0.5 1 NA
3 1 -1 0 3 NA blue 0.5 1 NA
4 1 -1 0 5 NA blue 0.5 1 NA
5 1 -1 0 0 NA blue 0.5 1 NA
6 1 -1 0 2 NA blue 0.5 1 NA
7 1 -1 0 2 NA blue 0.5 1 NA
8 1 -1 0 0 NA blue 0.5 1 NA
9 1 -1 0 0 NA blue 0.5 1 NA
10 1 -1 0 1 NA blue 0.5 1 NA
draw_libsize_qq works as expected
Code
ggplot2::layer_data(result)
Output
x y sample theoretical PANEL group shape colour size fill
1 -1.95996398 4632496 4632496 -1.95996398 1 -1 19 black 1.5 NA
2 -1.43953147 4642530 4642530 -1.43953147 1 -1 19 black 1.5 NA
3 -1.15034938 4778014 4778014 -1.15034938 1 -1 19 black 1.5 NA
4 -0.93458929 4923925 4923925 -0.93458929 1 -1 19 black 1.5 NA
5 -0.75541503 4990556 4990556 -0.75541503 1 -1 19 black 1.5 NA
6 -0.59776013 5016838 5016838 -0.59776013 1 -1 19 black 1.5 NA
7 -0.45376219 5026848 5026848 -0.45376219 1 -1 19 black 1.5 NA
8 -0.31863936 5154958 5154958 -0.31863936 1 -1 19 black 1.5 NA
9 -0.18911843 5286953 5286953 -0.18911843 1 -1 19 black 1.5 NA
10 -0.06270678 5314431 5314431 -0.06270678 1 -1 19 black 1.5 NA
11 0.06270678 5417510 5417510 0.06270678 1 -1 19 black 1.5 NA
12 0.18911843 5426566 5426566 0.18911843 1 -1 19 black 1.5 NA
13 0.31863936 5474927 5474927 0.31863936 1 -1 19 black 1.5 NA
14 0.45376219 5533212 5533212 0.45376219 1 -1 19 black 1.5 NA
15 0.59776013 5560720 5560720 0.59776013 1 -1 19 black 1.5 NA
16 0.75541503 6080233 6080233 0.75541503 1 -1 19 black 1.5 NA
17 0.93458929 6139497 6139497 0.93458929 1 -1 19 black 1.5 NA
18 1.15034938 6408552 6408552 1.15034938 1 -1 19 black 1.5 NA
19 1.43953147 6464043 6464043 1.43953147 1 -1 19 black 1.5 NA
20 1.95996398 7262374 7262374 1.95996398 1 -1 19 black 1.5 NA
alpha stroke
1 NA 0.5
2 NA 0.5
3 NA 0.5
4 NA 0.5
5 NA 0.5
6 NA 0.5
7 NA 0.5
8 NA 0.5
9 NA 0.5
10 NA 0.5
11 NA 0.5
12 NA 0.5
13 NA 0.5
14 NA 0.5
15 NA 0.5
16 NA 0.5
17 NA 0.5
18 NA 0.5
19 NA 0.5
20 NA 0.5
draw_nonzero_boxplot works as expected with default options
Code
ggplot2::layer_data(result)
Output
ymin lower middle upper ymax outliers notchupper notchlower x flipped_aes
1 2863 2996.25 3032 3116.75 3265 2600 3074.572 2989.428 1 FALSE
PANEL group ymin_final ymax_final xmin xmax xid newx new_width weight
1 1 1 2600 3265 0.625 1.375 1 1 0.75 1
colour fill alpha shape linetype linewidth
1 grey20 white NA 19 solid 0.5
Code
ggplot2::layer_data(result, 2)
Output
ymin lower middle upper ymax outliers notchupper notchlower x relvarwidth
1 2863 2996.25 3032 3116.75 3265 2600 3074.572 2989.428 1 4.472136
flipped_aes PANEL group xmin xmax xid newx new_width colour linewidth
1 FALSE 1 1 0.625 1.375 1 1 0.75 black 0.5
linetype width alpha
1 1 0.5 NA
Code
ggplot2::layer_data(result, 3)
Output
x y PANEL group shape colour size fill alpha stroke
1 0.9509281 2911.890 1 1 19 black 1.5 NA 0.25 0.5
2 1.0870438 3115.329 1 1 19 black 1.5 NA 0.25 0.5
3 1.1126466 3121.926 1 1 19 black 1.5 NA 0.25 0.5
4 1.1722427 3159.743 1 1 19 black 1.5 NA 0.25 0.5
5 1.0316643 3011.771 1 1 19 black 1.5 NA 0.25 0.5
6 0.8684829 3075.733 1 1 19 black 1.5 NA 0.25 0.5
7 1.0115864 2966.896 1 1 19 black 1.5 NA 0.25 0.5
8 0.8889332 3043.250 1 1 19 black 1.5 NA 0.25 0.5
9 0.8701430 3015.711 1 1 19 black 1.5 NA 0.25 0.5
10 0.9092406 3101.033 1 1 19 black 1.5 NA 0.25 0.5
11 1.1837041 2912.623 1 1 19 black 1.5 NA 0.25 0.5
12 1.1671752 3136.353 1 1 19 black 1.5 NA 0.25 0.5
13 1.0535626 3021.206 1 1 19 black 1.5 NA 0.25 0.5
14 1.0045885 2599.827 1 1 19 black 1.5 NA 0.25 0.5
15 0.9452316 3010.244 1 1 19 black 1.5 NA 0.25 0.5
16 1.0192162 3265.007 1 1 19 black 1.5 NA 0.25 0.5
17 0.9702712 3107.241 1 1 19 black 1.5 NA 0.25 0.5
18 0.8265099 2862.772 1 1 19 black 1.5 NA 0.25 0.5
19 1.1518527 3006.086 1 1 19 black 1.5 NA 0.25 0.5
20 0.9440135 3176.225 1 1 19 black 1.5 NA 0.25 0.5
draw_nonzero_boxplot works as expected with custom options
Code
ggplot2::layer_data(result)
Output
ymin lower middle upper ymax outliers notchupper notchlower x flipped_aes
1 2863 2996.25 3032 3116.75 3265 2600 3074.572 2989.428 1 FALSE
PANEL group ymin_final ymax_final xmin xmax xid newx new_width weight
1 1 1 2600 3265 0.625 1.375 1 1 0.75 1
colour fill alpha shape linetype linewidth
1 grey20 white NA 19 solid 0.5
Code
ggplot2::layer_data(result, 2)
Output
ymin lower middle upper ymax outliers notchupper notchlower x relvarwidth
1 2863 2996.25 3032 3116.75 3265 2600 3074.572 2989.428 1 4.472136
flipped_aes PANEL group xmin xmax xid newx new_width colour linewidth
1 FALSE 1 1 0.625 1.375 1 1 0.75 black 0.5
linetype width alpha
1 1 0.5 NA
Code
ggplot2::layer_data(result, 3)
Output
x y PANEL group shape colour size fill alpha stroke
1 1 2912 1 1 19 black 1.5 NA 1 0.5
2 1 3115 1 1 19 black 1.5 NA 1 0.5
3 1 3122 1 1 19 black 1.5 NA 1 0.5
4 1 3160 1 1 19 black 1.5 NA 1 0.5
5 1 3012 1 1 19 black 1.5 NA 1 0.5
6 1 3076 1 1 19 black 1.5 NA 1 0.5
7 1 2967 1 1 19 black 1.5 NA 1 0.5
8 1 3043 1 1 19 black 1.5 NA 1 0.5
9 1 3016 1 1 19 black 1.5 NA 1 0.5
10 1 3101 1 1 19 black 1.5 NA 1 0.5
11 1 2913 1 1 19 black 1.5 NA 1 0.5
12 1 3136 1 1 19 black 1.5 NA 1 0.5
13 1 3021 1 1 19 black 1.5 NA 1 0.5
14 1 2600 1 1 19 black 1.5 NA 1 0.5
15 1 3010 1 1 19 black 1.5 NA 1 0.5
16 1 3265 1 1 19 black 1.5 NA 1 0.5
17 1 3107 1 1 19 black 1.5 NA 1 0.5
18 1 2863 1 1 19 black 1.5 NA 1 0.5
19 1 3006 1 1 19 black 1.5 NA 1 0.5
20 1 3176 1 1 19 black 1.5 NA 1 0.5
draw_genes_barplot works as expected with default options
Code
ggplot2::layer_data(result)
Output
fill y count prop x flipped_aes PANEL group ymin ymax xmin xmax
1 #F8766D 477 207 1 1 FALSE 1 1 270 477 0.55 1.45
2 #F8766D 326 133 1 2 FALSE 1 2 193 326 1.55 2.45
3 #F8766D 254 88 1 3 FALSE 1 3 166 254 2.55 3.45
4 #F8766D 185 68 1 4 FALSE 1 4 117 185 3.55 4.45
5 #F8766D 218 94 1 5 FALSE 1 5 124 218 4.55 5.45
6 #F8766D 266 108 1 6 FALSE 1 6 158 266 5.55 6.45
7 #F8766D 259 103 1 7 FALSE 1 7 156 259 6.55 7.45
8 #F8766D 212 95 1 8 FALSE 1 8 117 212 7.55 8.45
9 #F8766D 189 70 1 9 FALSE 1 9 119 189 8.55 9.45
10 #F8766D 180 74 1 10 FALSE 1 10 106 180 9.55 10.45
11 #F8766D 297 120 1 11 FALSE 1 11 177 297 10.55 11.45
12 #F8766D 222 92 1 12 FALSE 1 12 130 222 11.55 12.45
13 #F8766D 114 46 1 13 FALSE 1 13 68 114 12.55 13.45
14 #F8766D 156 77 1 14 FALSE 1 14 79 156 13.55 14.45
15 #F8766D 196 85 1 15 FALSE 1 15 111 196 14.55 15.45
16 #F8766D 188 76 1 16 FALSE 1 16 112 188 15.55 16.45
17 #F8766D 281 113 1 17 FALSE 1 17 168 281 16.55 17.45
18 #F8766D 85 31 1 18 FALSE 1 18 54 85 17.55 18.45
19 #F8766D 323 130 1 19 FALSE 1 19 193 323 18.55 19.45
20 #F8766D 127 41 1 20 FALSE 1 20 86 127 19.55 20.45
21 #F8766D 87 28 1 21 FALSE 1 21 59 87 20.55 21.45
22 #F8766D 117 47 1 22 FALSE 1 22 70 117 21.55 22.45
23 #F8766D 186 75 1 23 FALSE 1 23 111 186 22.55 23.45
24 #F8766D 110 51 1 24 FALSE 1 24 59 110 23.55 24.45
25 #F8766D 11 7 1 25 FALSE 1 25 4 11 24.55 25.45
26 #F8766D 19 5 1 26 FALSE 1 26 14 19 25.55 26.45
27 #00BFC4 270 270 1 1 FALSE 1 27 0 270 0.55 1.45
28 #00BFC4 193 193 1 2 FALSE 1 28 0 193 1.55 2.45
29 #00BFC4 166 166 1 3 FALSE 1 29 0 166 2.55 3.45
30 #00BFC4 117 117 1 4 FALSE 1 30 0 117 3.55 4.45
31 #00BFC4 124 124 1 5 FALSE 1 31 0 124 4.55 5.45
32 #00BFC4 158 158 1 6 FALSE 1 32 0 158 5.55 6.45
33 #00BFC4 156 156 1 7 FALSE 1 33 0 156 6.55 7.45
34 #00BFC4 117 117 1 8 FALSE 1 34 0 117 7.55 8.45
35 #00BFC4 119 119 1 9 FALSE 1 35 0 119 8.55 9.45
36 #00BFC4 106 106 1 10 FALSE 1 36 0 106 9.55 10.45
37 #00BFC4 177 177 1 11 FALSE 1 37 0 177 10.55 11.45
38 #00BFC4 130 130 1 12 FALSE 1 38 0 130 11.55 12.45
39 #00BFC4 68 68 1 13 FALSE 1 39 0 68 12.55 13.45
40 #00BFC4 79 79 1 14 FALSE 1 40 0 79 13.55 14.45
41 #00BFC4 111 111 1 15 FALSE 1 41 0 111 14.55 15.45
42 #00BFC4 112 112 1 16 FALSE 1 42 0 112 15.55 16.45
43 #00BFC4 168 168 1 17 FALSE 1 43 0 168 16.55 17.45
44 #00BFC4 54 54 1 18 FALSE 1 44 0 54 17.55 18.45
45 #00BFC4 193 193 1 19 FALSE 1 45 0 193 18.55 19.45
46 #00BFC4 86 86 1 20 FALSE 1 46 0 86 19.55 20.45
47 #00BFC4 59 59 1 21 FALSE 1 47 0 59 20.55 21.45
48 #00BFC4 70 70 1 22 FALSE 1 48 0 70 21.55 22.45
49 #00BFC4 111 111 1 23 FALSE 1 49 0 111 22.55 23.45
50 #00BFC4 59 59 1 24 FALSE 1 50 0 59 23.55 24.45
51 #00BFC4 4 4 1 25 FALSE 1 51 0 4 24.55 25.45
52 #00BFC4 14 14 1 26 FALSE 1 52 0 14 25.55 26.45
colour linewidth linetype alpha
1 NA 0.5 1 NA
2 NA 0.5 1 NA
3 NA 0.5 1 NA
4 NA 0.5 1 NA
5 NA 0.5 1 NA
6 NA 0.5 1 NA
7 NA 0.5 1 NA
8 NA 0.5 1 NA
9 NA 0.5 1 NA
10 NA 0.5 1 NA
11 NA 0.5 1 NA
12 NA 0.5 1 NA
13 NA 0.5 1 NA
14 NA 0.5 1 NA
15 NA 0.5 1 NA
16 NA 0.5 1 NA
17 NA 0.5 1 NA
18 NA 0.5 1 NA
19 NA 0.5 1 NA
20 NA 0.5 1 NA
21 NA 0.5 1 NA
22 NA 0.5 1 NA
23 NA 0.5 1 NA
24 NA 0.5 1 NA
25 NA 0.5 1 NA
26 NA 0.5 1 NA
27 NA 0.5 1 NA
28 NA 0.5 1 NA
29 NA 0.5 1 NA
30 NA 0.5 1 NA
31 NA 0.5 1 NA
32 NA 0.5 1 NA
33 NA 0.5 1 NA
34 NA 0.5 1 NA
35 NA 0.5 1 NA
36 NA 0.5 1 NA
37 NA 0.5 1 NA
38 NA 0.5 1 NA
39 NA 0.5 1 NA
40 NA 0.5 1 NA
41 NA 0.5 1 NA
42 NA 0.5 1 NA
43 NA 0.5 1 NA
44 NA 0.5 1 NA
45 NA 0.5 1 NA
46 NA 0.5 1 NA
47 NA 0.5 1 NA
48 NA 0.5 1 NA
49 NA 0.5 1 NA
50 NA 0.5 1 NA
51 NA 0.5 1 NA
52 NA 0.5 1 NA
draw_genes_barplot works as expected with custom options
Code
ggplot2::layer_data(result)
Output
fill y count prop x flipped_aes PANEL group ymin ymax xmin xmax colour
1 #F8766D 254 88 1 1 FALSE 1 1 166 254 0.55 1.45 NA
2 #F8766D 297 120 1 2 FALSE 1 2 177 297 1.55 2.45 NA
3 #00BFC4 166 166 1 1 FALSE 1 3 0 166 0.55 1.45 NA
4 #00BFC4 177 177 1 2 FALSE 1 4 0 177 1.55 2.45 NA
linewidth linetype alpha
1 0.5 1 NA
2 0.5 1 NA
3 0.5 1 NA
4 0.5 1 NA
insightsengineering/hermes documentation built on July 17, 2024, 1:01 p.m.
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draw_libsize_hist works as expected
Code
ggplot2::layer_data(result)
Output
y count x xmin xmax density ncount ndensity flipped_aes
1 3 3 4675339 4529234 4821443 5.133318e-07 0.6 0.6 FALSE
2 4 4 4967547 4821443 5113652 6.844424e-07 0.8 0.8 FALSE
3 3 3 5259756 5113652 5405860 5.133318e-07 0.6 0.6 FALSE
4 5 5 5551965 5405860 5698069 8.555530e-07 1.0 1.0 FALSE
5 0 0 5844173 5698069 5990278 0.000000e+00 0.0 0.0 FALSE
6 2 2 6136382 5990278 6282486 3.422212e-07 0.4 0.4 FALSE
7 2 2 6428591 6282486 6574695 3.422212e-07 0.4 0.4 FALSE
8 0 0 6720799 6574695 6866904 0.000000e+00 0.0 0.0 FALSE
9 0 0 7013008 6866904 7159112 0.000000e+00 0.0 0.0 FALSE
10 1 1 7305217 7159112 7451321 1.711106e-07 0.2 0.2 FALSE
PANEL group ymin ymax colour fill linewidth linetype alpha
1 1 -1 0 3 NA blue 0.5 1 NA
2 1 -1 0 4 NA blue 0.5 1 NA
3 1 -1 0 3 NA blue 0.5 1 NA
4 1 -1 0 5 NA blue 0.5 1 NA
5 1 -1 0 0 NA blue 0.5 1 NA
6 1 -1 0 2 NA blue 0.5 1 NA
7 1 -1 0 2 NA blue 0.5 1 NA
8 1 -1 0 0 NA blue 0.5 1 NA
9 1 -1 0 0 NA blue 0.5 1 NA
10 1 -1 0 1 NA blue 0.5 1 NA
draw_libsize_qq works as expected
Code
ggplot2::layer_data(result)
Output
x y sample theoretical PANEL group shape colour size fill
1 -1.95996398 4632496 4632496 -1.95996398 1 -1 19 black 1.5 NA
2 -1.43953147 4642530 4642530 -1.43953147 1 -1 19 black 1.5 NA
3 -1.15034938 4778014 4778014 -1.15034938 1 -1 19 black 1.5 NA
4 -0.93458929 4923925 4923925 -0.93458929 1 -1 19 black 1.5 NA
5 -0.75541503 4990556 4990556 -0.75541503 1 -1 19 black 1.5 NA
6 -0.59776013 5016838 5016838 -0.59776013 1 -1 19 black 1.5 NA
7 -0.45376219 5026848 5026848 -0.45376219 1 -1 19 black 1.5 NA
8 -0.31863936 5154958 5154958 -0.31863936 1 -1 19 black 1.5 NA
9 -0.18911843 5286953 5286953 -0.18911843 1 -1 19 black 1.5 NA
10 -0.06270678 5314431 5314431 -0.06270678 1 -1 19 black 1.5 NA
11 0.06270678 5417510 5417510 0.06270678 1 -1 19 black 1.5 NA
12 0.18911843 5426566 5426566 0.18911843 1 -1 19 black 1.5 NA
13 0.31863936 5474927 5474927 0.31863936 1 -1 19 black 1.5 NA
14 0.45376219 5533212 5533212 0.45376219 1 -1 19 black 1.5 NA
15 0.59776013 5560720 5560720 0.59776013 1 -1 19 black 1.5 NA
16 0.75541503 6080233 6080233 0.75541503 1 -1 19 black 1.5 NA
17 0.93458929 6139497 6139497 0.93458929 1 -1 19 black 1.5 NA
18 1.15034938 6408552 6408552 1.15034938 1 -1 19 black 1.5 NA
19 1.43953147 6464043 6464043 1.43953147 1 -1 19 black 1.5 NA
20 1.95996398 7262374 7262374 1.95996398 1 -1 19 black 1.5 NA
alpha stroke
1 NA 0.5
2 NA 0.5
3 NA 0.5
4 NA 0.5
5 NA 0.5
6 NA 0.5
7 NA 0.5
8 NA 0.5
9 NA 0.5
10 NA 0.5
11 NA 0.5
12 NA 0.5
13 NA 0.5
14 NA 0.5
15 NA 0.5
16 NA 0.5
17 NA 0.5
18 NA 0.5
19 NA 0.5
20 NA 0.5
draw_nonzero_boxplot works as expected with default options
Code
ggplot2::layer_data(result)
Output
ymin lower middle upper ymax outliers notchupper notchlower x flipped_aes
1 2863 2996.25 3032 3116.75 3265 2600 3074.572 2989.428 1 FALSE
PANEL group ymin_final ymax_final xmin xmax xid newx new_width weight
1 1 1 2600 3265 0.625 1.375 1 1 0.75 1
colour fill alpha shape linetype linewidth
1 grey20 white NA 19 solid 0.5
Code
ggplot2::layer_data(result, 2)
Output
ymin lower middle upper ymax outliers notchupper notchlower x relvarwidth
1 2863 2996.25 3032 3116.75 3265 2600 3074.572 2989.428 1 4.472136
flipped_aes PANEL group xmin xmax xid newx new_width colour linewidth
1 FALSE 1 1 0.625 1.375 1 1 0.75 black 0.5
linetype width alpha
1 1 0.5 NA
Code
ggplot2::layer_data(result, 3)
Output
x y PANEL group shape colour size fill alpha stroke
1 0.9509281 2911.890 1 1 19 black 1.5 NA 0.25 0.5
2 1.0870438 3115.329 1 1 19 black 1.5 NA 0.25 0.5
3 1.1126466 3121.926 1 1 19 black 1.5 NA 0.25 0.5
4 1.1722427 3159.743 1 1 19 black 1.5 NA 0.25 0.5
5 1.0316643 3011.771 1 1 19 black 1.5 NA 0.25 0.5
6 0.8684829 3075.733 1 1 19 black 1.5 NA 0.25 0.5
7 1.0115864 2966.896 1 1 19 black 1.5 NA 0.25 0.5
8 0.8889332 3043.250 1 1 19 black 1.5 NA 0.25 0.5
9 0.8701430 3015.711 1 1 19 black 1.5 NA 0.25 0.5
10 0.9092406 3101.033 1 1 19 black 1.5 NA 0.25 0.5
11 1.1837041 2912.623 1 1 19 black 1.5 NA 0.25 0.5
12 1.1671752 3136.353 1 1 19 black 1.5 NA 0.25 0.5
13 1.0535626 3021.206 1 1 19 black 1.5 NA 0.25 0.5
14 1.0045885 2599.827 1 1 19 black 1.5 NA 0.25 0.5
15 0.9452316 3010.244 1 1 19 black 1.5 NA 0.25 0.5
16 1.0192162 3265.007 1 1 19 black 1.5 NA 0.25 0.5
17 0.9702712 3107.241 1 1 19 black 1.5 NA 0.25 0.5
18 0.8265099 2862.772 1 1 19 black 1.5 NA 0.25 0.5
19 1.1518527 3006.086 1 1 19 black 1.5 NA 0.25 0.5
20 0.9440135 3176.225 1 1 19 black 1.5 NA 0.25 0.5
draw_nonzero_boxplot works as expected with custom options
Code
ggplot2::layer_data(result)
Output
ymin lower middle upper ymax outliers notchupper notchlower x flipped_aes
1 2863 2996.25 3032 3116.75 3265 2600 3074.572 2989.428 1 FALSE
PANEL group ymin_final ymax_final xmin xmax xid newx new_width weight
1 1 1 2600 3265 0.625 1.375 1 1 0.75 1
colour fill alpha shape linetype linewidth
1 grey20 white NA 19 solid 0.5
Code
ggplot2::layer_data(result, 2)
Output
ymin lower middle upper ymax outliers notchupper notchlower x relvarwidth
1 2863 2996.25 3032 3116.75 3265 2600 3074.572 2989.428 1 4.472136
flipped_aes PANEL group xmin xmax xid newx new_width colour linewidth
1 FALSE 1 1 0.625 1.375 1 1 0.75 black 0.5
linetype width alpha
1 1 0.5 NA
Code
ggplot2::layer_data(result, 3)
Output
x y PANEL group shape colour size fill alpha stroke
1 1 2912 1 1 19 black 1.5 NA 1 0.5
2 1 3115 1 1 19 black 1.5 NA 1 0.5
3 1 3122 1 1 19 black 1.5 NA 1 0.5
4 1 3160 1 1 19 black 1.5 NA 1 0.5
5 1 3012 1 1 19 black 1.5 NA 1 0.5
6 1 3076 1 1 19 black 1.5 NA 1 0.5
7 1 2967 1 1 19 black 1.5 NA 1 0.5
8 1 3043 1 1 19 black 1.5 NA 1 0.5
9 1 3016 1 1 19 black 1.5 NA 1 0.5
10 1 3101 1 1 19 black 1.5 NA 1 0.5
11 1 2913 1 1 19 black 1.5 NA 1 0.5
12 1 3136 1 1 19 black 1.5 NA 1 0.5
13 1 3021 1 1 19 black 1.5 NA 1 0.5
14 1 2600 1 1 19 black 1.5 NA 1 0.5
15 1 3010 1 1 19 black 1.5 NA 1 0.5
16 1 3265 1 1 19 black 1.5 NA 1 0.5
17 1 3107 1 1 19 black 1.5 NA 1 0.5
18 1 2863 1 1 19 black 1.5 NA 1 0.5
19 1 3006 1 1 19 black 1.5 NA 1 0.5
20 1 3176 1 1 19 black 1.5 NA 1 0.5
draw_genes_barplot works as expected with default options
Code
ggplot2::layer_data(result)
Output
fill y count prop x flipped_aes PANEL group ymin ymax xmin xmax
1 #F8766D 477 207 1 1 FALSE 1 1 270 477 0.55 1.45
2 #F8766D 326 133 1 2 FALSE 1 2 193 326 1.55 2.45
3 #F8766D 254 88 1 3 FALSE 1 3 166 254 2.55 3.45
4 #F8766D 185 68 1 4 FALSE 1 4 117 185 3.55 4.45
5 #F8766D 218 94 1 5 FALSE 1 5 124 218 4.55 5.45
6 #F8766D 266 108 1 6 FALSE 1 6 158 266 5.55 6.45
7 #F8766D 259 103 1 7 FALSE 1 7 156 259 6.55 7.45
8 #F8766D 212 95 1 8 FALSE 1 8 117 212 7.55 8.45
9 #F8766D 189 70 1 9 FALSE 1 9 119 189 8.55 9.45
10 #F8766D 180 74 1 10 FALSE 1 10 106 180 9.55 10.45
11 #F8766D 297 120 1 11 FALSE 1 11 177 297 10.55 11.45
12 #F8766D 222 92 1 12 FALSE 1 12 130 222 11.55 12.45
13 #F8766D 114 46 1 13 FALSE 1 13 68 114 12.55 13.45
14 #F8766D 156 77 1 14 FALSE 1 14 79 156 13.55 14.45
15 #F8766D 196 85 1 15 FALSE 1 15 111 196 14.55 15.45
16 #F8766D 188 76 1 16 FALSE 1 16 112 188 15.55 16.45
17 #F8766D 281 113 1 17 FALSE 1 17 168 281 16.55 17.45
18 #F8766D 85 31 1 18 FALSE 1 18 54 85 17.55 18.45
19 #F8766D 323 130 1 19 FALSE 1 19 193 323 18.55 19.45
20 #F8766D 127 41 1 20 FALSE 1 20 86 127 19.55 20.45
21 #F8766D 87 28 1 21 FALSE 1 21 59 87 20.55 21.45
22 #F8766D 117 47 1 22 FALSE 1 22 70 117 21.55 22.45
23 #F8766D 186 75 1 23 FALSE 1 23 111 186 22.55 23.45
24 #F8766D 110 51 1 24 FALSE 1 24 59 110 23.55 24.45
25 #F8766D 11 7 1 25 FALSE 1 25 4 11 24.55 25.45
26 #F8766D 19 5 1 26 FALSE 1 26 14 19 25.55 26.45
27 #00BFC4 270 270 1 1 FALSE 1 27 0 270 0.55 1.45
28 #00BFC4 193 193 1 2 FALSE 1 28 0 193 1.55 2.45
29 #00BFC4 166 166 1 3 FALSE 1 29 0 166 2.55 3.45
30 #00BFC4 117 117 1 4 FALSE 1 30 0 117 3.55 4.45
31 #00BFC4 124 124 1 5 FALSE 1 31 0 124 4.55 5.45
32 #00BFC4 158 158 1 6 FALSE 1 32 0 158 5.55 6.45
33 #00BFC4 156 156 1 7 FALSE 1 33 0 156 6.55 7.45
34 #00BFC4 117 117 1 8 FALSE 1 34 0 117 7.55 8.45
35 #00BFC4 119 119 1 9 FALSE 1 35 0 119 8.55 9.45
36 #00BFC4 106 106 1 10 FALSE 1 36 0 106 9.55 10.45
37 #00BFC4 177 177 1 11 FALSE 1 37 0 177 10.55 11.45
38 #00BFC4 130 130 1 12 FALSE 1 38 0 130 11.55 12.45
39 #00BFC4 68 68 1 13 FALSE 1 39 0 68 12.55 13.45
40 #00BFC4 79 79 1 14 FALSE 1 40 0 79 13.55 14.45
41 #00BFC4 111 111 1 15 FALSE 1 41 0 111 14.55 15.45
42 #00BFC4 112 112 1 16 FALSE 1 42 0 112 15.55 16.45
43 #00BFC4 168 168 1 17 FALSE 1 43 0 168 16.55 17.45
44 #00BFC4 54 54 1 18 FALSE 1 44 0 54 17.55 18.45
45 #00BFC4 193 193 1 19 FALSE 1 45 0 193 18.55 19.45
46 #00BFC4 86 86 1 20 FALSE 1 46 0 86 19.55 20.45
47 #00BFC4 59 59 1 21 FALSE 1 47 0 59 20.55 21.45
48 #00BFC4 70 70 1 22 FALSE 1 48 0 70 21.55 22.45
49 #00BFC4 111 111 1 23 FALSE 1 49 0 111 22.55 23.45
50 #00BFC4 59 59 1 24 FALSE 1 50 0 59 23.55 24.45
51 #00BFC4 4 4 1 25 FALSE 1 51 0 4 24.55 25.45
52 #00BFC4 14 14 1 26 FALSE 1 52 0 14 25.55 26.45
colour linewidth linetype alpha
1 NA 0.5 1 NA
2 NA 0.5 1 NA
3 NA 0.5 1 NA
4 NA 0.5 1 NA
5 NA 0.5 1 NA
6 NA 0.5 1 NA
7 NA 0.5 1 NA
8 NA 0.5 1 NA
9 NA 0.5 1 NA
10 NA 0.5 1 NA
11 NA 0.5 1 NA
12 NA 0.5 1 NA
13 NA 0.5 1 NA
14 NA 0.5 1 NA
15 NA 0.5 1 NA
16 NA 0.5 1 NA
17 NA 0.5 1 NA
18 NA 0.5 1 NA
19 NA 0.5 1 NA
20 NA 0.5 1 NA
21 NA 0.5 1 NA
22 NA 0.5 1 NA
23 NA 0.5 1 NA
24 NA 0.5 1 NA
25 NA 0.5 1 NA
26 NA 0.5 1 NA
27 NA 0.5 1 NA
28 NA 0.5 1 NA
29 NA 0.5 1 NA
30 NA 0.5 1 NA
31 NA 0.5 1 NA
32 NA 0.5 1 NA
33 NA 0.5 1 NA
34 NA 0.5 1 NA
35 NA 0.5 1 NA
36 NA 0.5 1 NA
37 NA 0.5 1 NA
38 NA 0.5 1 NA
39 NA 0.5 1 NA
40 NA 0.5 1 NA
41 NA 0.5 1 NA
42 NA 0.5 1 NA
43 NA 0.5 1 NA
44 NA 0.5 1 NA
45 NA 0.5 1 NA
46 NA 0.5 1 NA
47 NA 0.5 1 NA
48 NA 0.5 1 NA
49 NA 0.5 1 NA
50 NA 0.5 1 NA
51 NA 0.5 1 NA
52 NA 0.5 1 NA
draw_genes_barplot works as expected with custom options
Code
ggplot2::layer_data(result)
Output
fill y count prop x flipped_aes PANEL group ymin ymax xmin xmax colour
1 #F8766D 254 88 1 1 FALSE 1 1 166 254 0.55 1.45 NA
2 #F8766D 297 120 1 2 FALSE 1 2 177 297 1.55 2.45 NA
3 #00BFC4 166 166 1 1 FALSE 1 3 0 166 0.55 1.45 NA
4 #00BFC4 177 177 1 2 FALSE 1 4 0 177 1.55 2.45 NA
linewidth linetype alpha
1 0.5 1 NA
2 0.5 1 NA
3 0.5 1 NA
4 0.5 1 NA
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