plot_all: All Standard Plots in Default Setting

In insightsengineering/hermes: Preprocessing, analyzing, and reporting of RNA-seq data

All Standard Plots in Default Setting

Description

This generates all standard plots - histogram and q-q plot of library sizes, density plot of the (log) counts distributions, boxplot of the number of number of non-zero expressed genes per sample, and a stacked barplot of low expression genes by chromosome at default setting.

Usage

## S4 method for signature 'AnyHermesData'
autoplot(object)

Arguments

object

(AnyHermesData) input.

Value

A list with the ggplot objects from draw_libsize_hist(), draw_libsize_qq(), draw_libsize_densities(), draw_nonzero_boxplot() and draw_genes_barplot() functions with default settings.

Examples

result <- hermes_data
autoplot(result)

insightsengineering/hermes documentation built on March 11, 2024, 11:04 p.m.