set_tech_failure: Set Technical Failure Flags

In insightsengineering/hermes: Preprocessing, analyzing, and reporting of RNA-seq data

Set Technical Failure Flags

Description

Setter function which allows the user to define a sample manually as a technical failure.

Usage

set_tech_failure(object, sample_ids)

Arguments

object	(AnyHermesData) input.
sample_ids	(character) sample IDs to be flagged as technical failures.

Value

AnyHermesData object with modified technical failure flags.

See Also

add_quality_flags() which automatically sets all (gene and sample) quality flags, including these technical failure flags.

Examples

# Manually flag technical failures in a `AnyHermesData` object.
object <- hermes_data
get_tech_failure(object)["06520101B0017R"]
result <- set_tech_failure(object, c("06520101B0017R", "06520047C0017R"))
get_tech_failure(result)["06520101B0017R"]

insightsengineering/hermes documentation built on Sept. 19, 2024, 9:06 p.m.