adjustFractions: adjustFractions

In jasonserviss/CIMseq: CIMseq is a software suite for analysis of scRNAseq data that has been produced using the cellular interactions by multiplet sequencing method

Description

Transforms continious fractions into a binary martix where 1 indicates a connection between classes.

Usage

adjustFractions(singlets, multiplets, swarm, binary = TRUE,
  theoretical.max = Inf, ...)

Arguments

singlets	CIMseqSinglets; A CIMseqSinglets object.
multiplets	CIMseqMultiplets; A CIMseqMultiplets object.
swarm	CIMseqSwarm or matrix; A CIMseqSwarm object or a matrix of fractions.
binary	logical; Indicates if adjusted fractions should be returned as binary values.
theoretical.max	integer; See estimateCells.
...	additional arguments to pass on

Value

Adjusted fractions matrix.

Author(s)

Jason T. Serviss

Examples

#use demo data

jasonserviss/CIMseq documentation built on Jan. 11, 2020, 4:42 a.m.