costCalc: costCalc
In jasonserviss/CIMseq: CIMseq is a software suite for analysis of scRNAseq data that has been produced using the cellular interactions by multiplet sequencing method
Description
Usage
Arguments
Author(s)
Description
This function takes a vector of gene counts per million for one multiplet
that is being deconvoluted and a matrix of synthetic multiplets and
calculates the cost which is returned to the optimization algorithm during
deconvolution.
Usage
1
costCalc(oneMultiplet, syntheticMultiplets)
Arguments
oneMultiplet
Numeric; a numeric vector of counts per million for one
multiplet.
syntheticMultiplets
Matrix; a numeric matrix of synthetic multiplets
with samples as columns and genes as rows.
Author(s)
Jason T. Serviss
jasonserviss/CIMseq documentation built on Jan. 11, 2020, 4:42 a.m.
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Description Usage Arguments Author(s)
Description
This function takes a vector of gene counts per million for one multiplet that is being deconvoluted and a matrix of synthetic multiplets and calculates the cost which is returned to the optimization algorithm during deconvolution.
Usage
1 | costCalc(oneMultiplet, syntheticMultiplets)
|
Arguments
oneMultiplet |
Numeric; a numeric vector of counts per million for one multiplet. |
syntheticMultiplets |
Matrix; a numeric matrix of synthetic multiplets with samples as columns and genes as rows. |
Author(s)
Jason T. Serviss
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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