calculateCost: calculateCost
In jasonserviss/CIMseq: CIMseq is a software suite for analysis of scRNAseq data that has been produced using the cellular interactions by multiplet sequencing method
Description
Usage
Arguments
Author(s)
Description
Wrapper for deconvolution cost function using the Armadillo C++ library.
Usage
1
calculateCost(oneMultiplet, singletSubset, fractions, n)
Arguments
oneMultiplet
Integer; a integer vector of rounded counts per million
for one multiplet.
singletSubset
Matrix; Numeric matrix with the preallocated singlets.
Each of the n synthetic multiplets should be stacked, i.e. rbind.
fractions
Numeric; a numeric vector with length equal to
ncol(singlets) indicating the fractions that each column should be
multiplied with.
n
Integer; length 1 integer indicating the number of synthetic
multiplets to generate.
Author(s)
Jason T. Serviss
jasonserviss/CIMseq documentation built on Jan. 11, 2020, 4:42 a.m.
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Description Usage Arguments Author(s)
Description
Wrapper for deconvolution cost function using the Armadillo C++ library.
Usage
1 | calculateCost(oneMultiplet, singletSubset, fractions, n)
|
Arguments
oneMultiplet |
Integer; a integer vector of rounded counts per million for one multiplet. |
singletSubset |
Matrix; Numeric matrix with the preallocated singlets. Each of the n synthetic multiplets should be stacked, i.e. rbind. |
fractions |
Numeric; a numeric vector with length equal to ncol(singlets) indicating the fractions that each column should be multiplied with. |
n |
Integer; length 1 integer indicating the number of synthetic multiplets to generate. |
Author(s)
Jason T. Serviss
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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