getMultipletsForEdge: getMultipletsForEdge

In jasonserviss/CIMseq: CIMseq is a software suite for analysis of scRNAseq data that has been produced using the cellular interactions by multiplet sequencing method

Description

Returns the names of the multiplets that are associated with an edge.

Usage

getMultipletsForEdge(swarm, ...)

## S4 method for signature 'CIMseqSwarm'
getMultipletsForEdge(swarm, singlets, multiplets,
  edges, theoretical.max = Inf, ...)

Arguments

swarm	CIMseqSwarm; A CIMseqSwarm object.
...	additional arguments to pass on
singlets	CIMseqSinglets; A CIMseqSinglets object.
multiplets	CIMseqMultiplets; A CIMseqMultiplets object.
edges	data.frame; Edges of interest. Edges are indicated by the nodes they connect with one node in column one and the other node in column 2.
theoretical.max	integer; See estimateCells.

Value

If the edges argument only includes one row, a vector of multiplet names is returned. If several edges are interogated a list is returned with one element per edge containing the names of the multiplets.

Author(s)

Jason T. Serviss

Examples

output <- getMultipletsForEdge(
CIMseqSwarm_test, 
CIMseqSinglets_test, 
CIMseqMultiplets_test, 
data.frame("A375", "HOS")
)

jasonserviss/CIMseq documentation built on Jan. 11, 2020, 4:42 a.m.