getCellsForMultiplet: getCellsForMultiplet
In jasonserviss/CIMseq: CIMseq is a software suite for analysis of scRNAseq data that has been produced using the cellular interactions by multiplet sequencing method
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Returns the names of the cell types detected in a multiplet.
Usage
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getCellsForMultiplet(swarm, ...)
## S4 method for signature 'CIMseqSwarm'
getCellsForMultiplet(swarm, singlets, multiplets,
multipletName = NULL, drop = TRUE, ...)
Arguments
swarm
A CIMseqSwarm object.
...
additional arguments to pass on
singlets
A CIMseqSinglets object.
multiplets
A CIMseqMultiplets object.
multipletName
character; The name of the multiplet of interest.
drop
logical; Remove self connections?
Value
Edge names.
Author(s)
Jason T. Serviss
Examples
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output <- getCellsForMultiplet(
CIMseqSwarm_test, CIMseqSinglets_test, CIMseqMultiplets_test,
"m.NJB00204.G04"
)
jasonserviss/CIMseq documentation built on Jan. 11, 2020, 4:42 a.m.
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Description Usage Arguments Value Author(s) Examples
Description
Returns the names of the cell types detected in a multiplet.
Usage
1 2 3 4 5 | getCellsForMultiplet(swarm, ...)
## S4 method for signature 'CIMseqSwarm'
getCellsForMultiplet(swarm, singlets, multiplets,
multipletName = NULL, drop = TRUE, ...)
|
Arguments
swarm |
A CIMseqSwarm object. |
... |
additional arguments to pass on |
singlets |
A CIMseqSinglets object. |
multiplets |
A CIMseqMultiplets object. |
multipletName |
character; The name of the multiplet of interest. |
drop |
logical; Remove self connections? |
Value
Edge names.
Author(s)
Jason T. Serviss
Examples
1 2 3 4 | output <- getCellsForMultiplet(
CIMseqSwarm_test, CIMseqSinglets_test, CIMseqMultiplets_test,
"m.NJB00204.G04"
)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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