plotCountsMarkers: plotCountsMarkers
In jasonserviss/CIMseq: CIMseq is a software suite for analysis of scRNAseq data that has been produced using the cellular interactions by multiplet sequencing method
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Plot method for CIMseqSinglets objects to display "markers", typically genes
thought to be discreetly expressed in one cell type, in all samples.
Usage
1
2
3
4
5
plotCountsMarkers(singlets, multiplets, ...)
## S4 method for signature 'CIMseqSinglets,CIMseqMultiplets'
plotCountsMarkers(singlets,
multiplets, markers = NULL, log = TRUE, normalize = TRUE, ...)
Arguments
singlets
CIMseqSinglets; An CIMseqSinglets object.
multiplets
CIMseqMultiplets; An CIMseqMultiplets object.
...
additional arguments to pass on.
markers
character; A vector with the 2 markers to plot.
log
logical; Use log2 values? See plotCountsData.
normalize
logical; Use [0, 1] normalized values?
See processMarkers.
Value
A ggplot2 object containing the plot. See examples or the plotting
vignette for further help.
Author(s)
Jason T. Serviss
Examples
1
2
markers <- c("ACTB", "GAPDH")
p <- plotCountsMarkers(CIMseqSinglets_test, CIMseqMultiplets_test, markers)
jasonserviss/CIMseq documentation built on Jan. 11, 2020, 4:42 a.m.
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Description Usage Arguments Value Author(s) Examples
Description
Plot method for CIMseqSinglets objects to display "markers", typically genes thought to be discreetly expressed in one cell type, in all samples.
Usage
1 2 3 4 5 | plotCountsMarkers(singlets, multiplets, ...)
## S4 method for signature 'CIMseqSinglets,CIMseqMultiplets'
plotCountsMarkers(singlets,
multiplets, markers = NULL, log = TRUE, normalize = TRUE, ...)
|
Arguments
singlets |
CIMseqSinglets; An CIMseqSinglets object. |
multiplets |
CIMseqMultiplets; An CIMseqMultiplets object. |
... |
additional arguments to pass on. |
markers |
character; A vector with the 2 markers to plot. |
log |
logical; Use log2 values? See |
normalize |
logical; Use [0, 1] normalized values?
See |
Value
A ggplot2 object containing the plot. See examples or the plotting vignette for further help.
Author(s)
Jason T. Serviss
Examples
1 2 | markers <- c("ACTB", "GAPDH")
p <- plotCountsMarkers(CIMseqSinglets_test, CIMseqMultiplets_test, markers)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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