plotCountsData: plotCountsData
In jasonserviss/CIMseq: CIMseq is a software suite for analysis of scRNAseq data that has been produced using the cellular interactions by multiplet sequencing method
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Assembles all data for plotCounts plots. End users should use
the plotData function.
Usage
1
2
3
4
5
plotCountsData(singlets, multiplets, ...)
## S4 method for signature 'CIMseqSinglets,CIMseqMultiplets'
plotCountsData(singlets,
multiplets, markers = NULL, log = TRUE, normalize = TRUE, ...)
Arguments
singlets
CIMseqSinglets; An CIMseqSinglets object.
multiplets
CIMseqMultiplets; An CIMseqMultiplets object.
...
additional arguments to pass on.
markers
character; A vector with the 2 markers to plot. Must be
present in rownames of counts.
log
logical; Use log2 + 1 values?
normalize
logical; Use [0, 1] normalized values?
See processMarkers.
Value
A tibble with columns:
Author(s)
Jason T. Serviss
Examples
1
jasonserviss/CIMseq documentation built on Jan. 11, 2020, 4:42 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) Examples
Description
Assembles all data for plotCounts plots. End users should use
the plotData function.
Usage
1 2 3 4 5 | plotCountsData(singlets, multiplets, ...)
## S4 method for signature 'CIMseqSinglets,CIMseqMultiplets'
plotCountsData(singlets,
multiplets, markers = NULL, log = TRUE, normalize = TRUE, ...)
|
Arguments
singlets |
CIMseqSinglets; An CIMseqSinglets object. |
multiplets |
CIMseqMultiplets; An CIMseqMultiplets object. |
... |
additional arguments to pass on. |
markers |
character; A vector with the 2 markers to plot. Must be present in rownames of counts. |
log |
logical; Use log2 + 1 values? |
normalize |
logical; Use [0, 1] normalized values?
See |
Value
A tibble with columns:
Author(s)
Jason T. Serviss
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.