adjustAccordingToFractions | adjustAccordingToFractions |
adjustFractions | adjustFractions |
appropriateSinglets | appropriateSinglets |
calcResiduals | calcResiduals |
calculateCost | calculateCost |
calculateCostDensity | calculateCostDensity |
calculateCosts | calculateCosts |
calculateEdgeStats | calculateEdgeStats |
calculateLogRowMeans | calculateLogRowMeans |
cellNumberPerClass | cellNumberPerClass |
CIMseqMultiplets | CIMseqMultiplets |
CIMseqMultiplets_test | CIMseqMultiplets object corresponding to test dataset. |
CIMseq-package | A package for analyzing tissue spatiality in scRNAseq data. |
CIMseqSinglets | CIMseqSinglets |
CIMseqSinglets_test | CIMseqSinglets object corresponding to test dataset. |
CIMseqSwarm | CIMseqSwarm |
CIMseqSwarm_test | CIMseqSwarm object corresponding to test dataset. |
col40 | col40 |
coloursFromTargets | coloursFromTargets |
convertToERCC | convertToERCC |
cost | cost |
costCalc | costCalc |
costNegSum | costNegSum |
countsPerClass | countsPerClass |
divide_by | divide_by |
draw_legend | draw_legend |
erccPerClass | erccPerClass |
estimateCells | estimateCells |
estimateTotalConnections | estimateTotalConnections |
expectedInteractionFreq | expectedInteractionFreq |
fixNegInf | fixNegInf |
getCellsForMultiplet | getCellsForMultiplet |
getEdgesForMultiplet | getEdgesForMultiplet |
getMultipletsForEdge | getMultipletsForEdge |
gg-class | "gg" class |
ggraph-class | "ggraph" class |
g_legend | g_legend |
longFormConnections | longFormConnections |
matrix_to_tibble | matrix_to_tibble |
means.dim.red | means.dim.red |
multipletSums | multipletSums |
multiply_by | multiply_by |
namedListToTibble | namedListToTibble |
normalizeFractions | normalizeFractions |
normalizeVec | normalizeVec |
pearsonsDist | pearsonsDist |
plotCountsData | plotCountsData |
plotCountsERCC | plotCountsERCC |
plotCountsMarkers | plotCountsMarkers |
plotData | plotData |
plotSwarmCircos | plotSwarmCircos |
plotSwarmGenes | plotSwarmGenes |
plotSwarmGraph | plotSwarmGraph |
plotSwarmPosition | plotSwarmPosition |
plotUnsupervisedClass | plotUnsupervisedClass |
plotUnsupervisedMarkers | plotUnsupervisedMarkers |
processMarkers | processMarkers |
pso.2.0 | pso.2.0 |
runTsne | runTsne |
sampleSinglets | sampleSinglets |
selectTopMax | selectTopMax |
selectTopVar | selectTopVar |
subsetSinglets | subsetSinglets |
swarmInit | swarmInit |
testCounts | Counts data used to demonstrate CIMseq package. |
testMeta | Meta data for the testCounts dataset. |
tidySinglets | tidySinglets |
tidySwarm | tidySwarm |
vecToMat | vecToMat |
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