plotSwarmPosition: plotSwarmPosition
In jasonserviss/CIMseq: CIMseq is a software suite for analysis of scRNAseq data that has been produced using the cellular interactions by multiplet sequencing method
Description
Usage
Arguments
Details
Value
Author(s)
Examples
Description
Subtitle
Usage
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plotSwarmPosition(swarm, ...)
## S4 method for signature 'CIMseqSwarm'
plotSwarmPosition(swarm, multiplet,
interval = NULL, ...)
Arguments
swarm
A CIMseqSwarm object.
...
additional arguments to pass on.
multiplet
The name of the multiplet to plot the swarm positions for.
interval
The iterations to be plotted if all recorded iteration
intervals should not be plotted.
Details
Plots the swarm position in a CIMseqSwarm object for each reported iteration
(specified by reportRate) when report was equal to TRUE during deconvolution.
Value
The plotSwarmPosition function returns an object of class spCounts.
Author(s)
Jason T. Serviss
Examples
1
#no test data where swarm was tracked with report arg.
jasonserviss/CIMseq documentation built on Jan. 11, 2020, 4:42 a.m.
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Description Usage Arguments Details Value Author(s) Examples
Description
Subtitle
Usage
1 2 3 4 5 | plotSwarmPosition(swarm, ...)
## S4 method for signature 'CIMseqSwarm'
plotSwarmPosition(swarm, multiplet,
interval = NULL, ...)
|
Arguments
swarm |
A CIMseqSwarm object. |
... |
additional arguments to pass on. |
multiplet |
The name of the multiplet to plot the swarm positions for. |
interval |
The iterations to be plotted if all recorded iteration intervals should not be plotted. |
Details
Plots the swarm position in a CIMseqSwarm object for each reported iteration (specified by reportRate) when report was equal to TRUE during deconvolution.
Value
The plotSwarmPosition function returns an object of class spCounts.
Author(s)
Jason T. Serviss
Examples
1 | #no test data where swarm was tracked with report arg.
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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