plotSwarmGenes: plotSwarmGenes
In jasonserviss/CIMseq: CIMseq is a software suite for analysis of scRNAseq data that has been produced using the cellular interactions by multiplet sequencing method
Description
Usage
Arguments
Value
Author(s)
Description
plotSwarmGenes
Usage
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plotSwarmGenes(swarm, ...)
## S4 method for signature 'CIMseqSwarm'
plotSwarmGenes(swarm, singlets, multiplets, genes,
multipletsToPlot, freq = 10, ...)
Arguments
swarm
CIMseqSwarm; A CIMseqSwarm object.
...
additional arguments to pass on.
singlets
CIMseqSinglets; A CIMseqSinglets object.
multiplets
CIMseqMultiplets; A CIMseqMultiplets object.
genes
Character; Genes to be plotted. Can not exceed 20.
multipletsToPlot
Character; Multiplets to be plotted.
freq
Numeric, Length 1 vector indicating the frequency the cost should
be calculated along x.
Value
A ggplot object.
Author(s)
Jason T. Serviss
jasonserviss/CIMseq documentation built on Jan. 11, 2020, 4:42 a.m.
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Description Usage Arguments Value Author(s)
Description
plotSwarmGenes
Usage
1 2 3 4 5 | plotSwarmGenes(swarm, ...)
## S4 method for signature 'CIMseqSwarm'
plotSwarmGenes(swarm, singlets, multiplets, genes,
multipletsToPlot, freq = 10, ...)
|
Arguments
swarm |
CIMseqSwarm; A CIMseqSwarm object. |
... |
additional arguments to pass on. |
singlets |
CIMseqSinglets; A CIMseqSinglets object. |
multiplets |
CIMseqMultiplets; A CIMseqMultiplets object. |
genes |
Character; Genes to be plotted. Can not exceed 20. |
multipletsToPlot |
Character; Multiplets to be plotted. |
freq |
Numeric, Length 1 vector indicating the frequency the cost should be calculated along x. |
Value
A ggplot object.
Author(s)
Jason T. Serviss
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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