swarmInit: swarmInit
In jasonserviss/CIMseq: CIMseq is a software suite for analysis of scRNAseq data that has been produced using the cellular interactions by multiplet sequencing method
Description
Usage
Arguments
Value
Author(s)
Description
Helper function to calculate the swarm initialization positions to provide
as the swarmInit argument to CIMseqSwarm.
Usage
1
swarmInit(singlets, k, null.weight = 1, seed = 9238232)
Arguments
singlets
CIMseqSinglets; A CIMseqSinglets object.
k
integer; Number of cells in each combination, i.e. 2 gives doublets,
3 gives triplets, etc. Must be >= 2.
null.weight
numeric; Weight to adjust the amount of noise in the
initialization positions. Default = 1.
seed
integer; A seed to set.
Value
A matrix with the swarm initialization state.
Author(s)
Martin Enge
jasonserviss/CIMseq documentation built on Jan. 11, 2020, 4:42 a.m.
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Description Usage Arguments Value Author(s)
Description
Helper function to calculate the swarm initialization positions to provide as the swarmInit argument to CIMseqSwarm.
Usage
1 | swarmInit(singlets, k, null.weight = 1, seed = 9238232)
|
Arguments
singlets |
CIMseqSinglets; A CIMseqSinglets object. |
k |
integer; Number of cells in each combination, i.e. 2 gives doublets, 3 gives triplets, etc. Must be >= 2. |
null.weight |
numeric; Weight to adjust the amount of noise in the initialization positions. Default = 1. |
seed |
integer; A seed to set. |
Value
A matrix with the swarm initialization state.
Author(s)
Martin Enge
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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