Description Usage Arguments Details Value Author(s) Examples
Calculates the x and y coordinates of the mean of each classif ied group.
1 2 3 |
my.dist |
A distance object typically produced with pearsonsDist. |
dims |
Argument to Rtsne. Numeric indicating the output dimensions. |
theta |
Argument to [Rtsne](https://cran.r-project.org/web/packages/Rtsne/index.html). |
initial_dims |
Argument to [Rtsne](https://cran.r-project.org/web/packages/Rtsne/index.html). |
max_iter |
Argument to [Rtsne](https://cran.r-project.org/web/packages/Rtsne/index.html). |
perplexity |
Argument to [Rtsne](https://cran.r-project.org/web/packages/Rtsne/index.html). |
seed |
The desired seed to set before running. |
is_distance |
Argument to [Rtsne](https://cran.r-project.org/web/packages/Rtsne/index.html). |
... |
Additional arguments to pass on |
This method is typically only used in conjunction with plotting. It calculates the 2 dimensional location of the mean of each classified group in the supplied unsupervised dimensionality reduction (t-SNE) data representation.
A matrix containing the mean value for each gene for each classification group.
Jason T. Serviss
1 2 | my.dist <- pearsonsDist(getData(CIMseqSinglets_test, "counts.cpm"), 1:2000)
tsne <- runTsne(my.dist, max_iter = 10)
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.