jbergenstrahle/STUtility: Analysis and visualization of Spatial Transcriptomics data

STutility collects useful tools for Spatial Transcriptomics data analysis within R. The package is built on top of popular Seurat R package, which is a toolkit for analysis and exploration of single cell RNA sequencing data (scRNAseq). STutility adds image functionallity to the Seurat workflow, allowing RNAseq data to be put in a spatial tissue context. Tutorials for data transformation, QC, analysis and visualization can be found on our website: https://ludvigla.github.io/STUtility_web_site/.

Getting started

Package details

Maintainer
LicenseMIT + file LICENSE
Version1.1.1
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("jbergenstrahle/STUtility")
jbergenstrahle/STUtility documentation built on March 14, 2023, 7:15 a.m.