create.array.from.feature.vals: Creates an array of dimensions...

In jbergenstrahle/STUtility: Analysis and visualization of Spatial Transcriptomics data

Creates an array of dimensions number_of_spots*3*number_of_features

Description

For each feature, a matrix is stored with nSpots number of rows and with the HSV color channels as columns. If dark.theme is set to TRUE, the V channel will be reserved for feature values and the S channel will be set to 1, otherwise the S channel will be resevred for feature values and the V channel will be set to 1.

Usage

create.array.from.feature.vals(
  data,
  features,
  hue_breaks,
  cols,
  dark.theme,
  verbose
)

Arguments

data	data.frame with feature values
features	feature names
hue_breaks	Hue values (same length as features)
cols	Custom colors
dark.theme	Used to select what channel the feature values should be encoded in
verbose	Print messages

jbergenstrahle/STUtility documentation built on March 14, 2023, 7:15 a.m.