ImagePlot: Function used to plot HE images obtained with 'LoadImages'

In jbergenstrahle/STUtility: Analysis and visualization of Spatial Transcriptomics data

Function used to plot HE images obtained with LoadImages

Description

Function used to plot HE images obtained with LoadImages

Usage

ImagePlot(
  object,
  indices = NULL,
  type = NULL,
  method = "raster",
  ncols = NULL,
  annotate = TRUE,
  darken = FALSE,
  fix.axes = FALSE
)

Arguments

object	Seurat object
indices	Image indices to select
type	Specify which image to display [options: "raw", "masked" or "processed"]
method	Specify display method (raster or viewer).
ncols	Number of columns in output grid of images
annotate	Will put a unique id in the top left corner
darken	Switches the background to black
fix.axes	Fix axes limits to be the same as section 1

jbergenstrahle/STUtility documentation built on March 14, 2023, 7:15 a.m.