FactorGeneLoadingPlot: Plot a bar chart with gene loadings
In jbergenstrahle/STUtility: Analysis and visualization of Spatial Transcriptomics data
FactorGeneLoadingPlot R Documentation
Plot a bar chart with gene loadings
Description
This function takes a ‘Seurat'object as input with a ’NMF' reduction slot
and plots a bar chart of gene weights (loadings) for the top most driving genes.
Usage
FactorGeneLoadingPlot(object, factor = 1, topn = 20, dark.theme = FALSE)
Arguments
object
Seurat object
factor
Factor to plot gene loadings for [default: 1]
topn
Top genes to show [default: 20]
dark.theme
Use a dark theme for the plot
jbergenstrahle/STUtility documentation built on March 14, 2023, 7:15 a.m.
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| FactorGeneLoadingPlot | R Documentation |
Plot a bar chart with gene loadings
Description
This function takes a ‘Seurat'object as input with a ’NMF' reduction slot and plots a bar chart of gene weights (loadings) for the top most driving genes.
Usage
FactorGeneLoadingPlot(object, factor = 1, topn = 20, dark.theme = FALSE)
Arguments
object |
Seurat object |
factor |
Factor to plot gene loadings for [default: 1] |
topn |
Top genes to show [default: 20] |
dark.theme |
Use a dark theme for the plot |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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