Create3DStack: Creates a stack of point patterns with aligned data and...

In jbergenstrahle/STUtility: Analysis and visualization of Spatial Transcriptomics data

Creates a stack of point patterns with aligned data and stores it in a 'Staffli' object.

Description

Creates a stack of point patterns with aligned data and stores it in a 'Staffli' object.

Usage

Create3DStack(object, limit = 0.4, maxnum = 50000, nx = 200, verbose = TRUE)

Arguments

object	Seurat object
limit	Cut-off threshold for segmentation of points. Has to be a value between 0-1.
maxnum	Maximum number of points to store for each section [default: 5e5]. If you are analyzing many samples you will have to decrease this number.
nx	Number of cells to interpolate over across the x axis
verbose	Print messages

Value

Seurat object

jbergenstrahle/STUtility documentation built on March 14, 2023, 7:15 a.m.