labelRGB: Select spots by rgb values after ST.DimPlot

In jbergenstrahle/STUtility: Analysis and visualization of Spatial Transcriptomics data

Select spots by rgb values after ST.DimPlot

Description

Select spots by rgb values after ST.DimPlot

Usage

labelRGB(
  object,
  dimPlot,
  label1 = "label1",
  label2 = NULL,
  red1 = c(0, 255),
  green1 = c(0, 255),
  blue1 = c(0, 255),
  red2 = c(0, 255),
  green2 = c(0, 255),
  blue2 = c(0, 255)
)

Arguments

object	A Seurat object
dimPlot	A 'ggplot' object created with ST.DimPlot
label1, label2	Optional names of the 1st and 2nd groups of capture-spots
red1	Red 1 limits
green1	Green 1 limits
blue1	Blue 1 limits
red2	Red 2 limits
green2	Green 2 limits
blue2	Blue 2 limits

jbergenstrahle/STUtility documentation built on March 14, 2023, 7:15 a.m.