README.md

In jbergenstrahle/STUtility: Analysis and visualization of Spatial Transcriptomics data

STUtility

STUtility becomes semla

STUtility will no longer be maintained and instead you can use our new R package semla which is available at https://github.com/ludvigla/semla.

Installation

To install STUtility from github (currently only option), you need to have devtools installed:

install.packages("remotes")

Finally, install STUtility:

remotes::install_github(
    "jbergenstrahle/STUtility"
)

Install STUtility in an anaconda environment (Mac OS)

From the terminal

conda create -n R4.0
conda activate R4.0
conda install -c conda-forge r-essentials r-base r-devtools r-spdep r-hdf5r
conda install -c bioconda r-fftwtools

From R

devtools::install_github(
    "jbergenstrahle/STUtility"
)

How to use the package

Please see https://ludvigla.github.io/STUtility_web_site/ for online documentation and tutorials in how to use the package

jbergenstrahle/STUtility documentation built on March 14, 2023, 7:15 a.m.