create.cols.from.array: Creates HSV colors from an array

In jbergenstrahle/STUtility: Analysis and visualization of Spatial Transcriptomics data

Creates HSV colors from an array

Description

If split.hsv = FALSE, the feature with the highest value in a spot will define the color for that spot. The intensity of the color will depend on if dark.theme is active and the magnitude of the feature value in that spot.

Usage

create.cols.from.array(
  data,
  d,
  features,
  cols,
  split.hsv,
  dark.theme,
  add.alpha
)

Arguments

data	data.frame with feature values
d	array created with create.array.from.vals function
features	Feature names
cols	Custom colors
split.hsv	Should the features be plotted separately?
dark.theme	Used to select what channel the feature values should be encoded in
add.alpha	Adds opacity to the output colors, defined by the scaled feature values

jbergenstrahle/STUtility documentation built on March 14, 2023, 7:15 a.m.