get.edges.Seurat | R Documentation |
Finds edges of a mask and returns a set of x,y coordinates aligned along the edges
## S3 method for class 'Seurat' get.edges(object, index = 1, verbose = FALSE, type = "masked.masks")
object |
Seurat object |
index |
Sample index |
verbose |
Print messages |
type |
image type to run edge detection on [default: 'masked.masks'] |
A list of data.frames with edge coordinates
## Not run: # Mask, align and plot edges for image 2 from a Seurat object edges <- LoadImages(se, verbose = TRUE) %>% MaskImages() %>% get.edges(index = 2) plot(as.raster(edges) %>% as.cimg()) ## End(Not run)
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