API for jeremymcrae/recessiveStats
Enrichment of recessive variants within genes

Global functions
SYNDROMES Man page
all_enrichment Man page Source code
analyse_inherited_enrichment Man page Source code
biallelic_func_enrichment Man page Source code
biallelic_lof_enrichment Man page Source code
biallelic_syn_enrichment Man page Source code
calculate_gene_similarity Man page Source code
calculate_no_match Man page Source code
calculate_proband_similarity Man page Source code
calculate_syndrome_rates Man page Source code
check_autozygosity_in_chrom Man page Source code
check_for_last_base_in_exon Man page Source code
check_sample_autozygosity_genome_wide Man page Source code
convert_genotypes Man page Source code
cumulative_frequency Man page Source code
enrichment_multiple_populations Man page Source code
enrichment_single_population Man page Source code
filter_exac_variants_by_cadd Man page Source code
find_file_pos Man page Source code
gencode Man page
get_count_combinations Man page Source code
get_cumulative_frequencies Man page Source code
get_ddd_cohort Man page Source code
get_ddd_variants_for_gene Man page Source code
get_ddd_vep_annotations Man page Source code
get_exac_variants_for_gene Man page Source code
get_exon_ends Man page Source code
get_gene_coordinates Man page Source code
get_gene_ids_for_hgnc Man page Source code
get_hemizygous Man page Source code
get_lines_from_vep_vcf Man page Source code
get_list_of_population_frequencies Man page Source code
get_most_severe_consequence Man page Source code
get_polyphen Man page Source code
get_transcript_ids_for_ensembl_gene_ids Man page Source code
lof_func_enrichment Man page Source code
open_suspected_syndromes Man page Source code
parse_vep_output Man page Source code
permute_probands Man page Source code
recessiveStats Man page
recessiveStats-package Man page
reformat_chrX_genotypes Man page Source code
remove_easy_nonfunctional Man page Source code
remove_high_frequency_vars Man page Source code
remove_nonfunctional_variants Man page Source code
request_from_ensembl Man page Source code
set_exac_path Man page Source code
standardise_multiple_alt_variants Man page Source code
sum_combo_tests Man page Source code
tally_alleles Man page Source code
test_gene Man page Source code
jeremymcrae/recessiveStats documentation built on May 17, 2017, 6:09 p.m.