API for jeremymcrae/recessiveStats
Enrichment of recessive variants within genes
| Global functions | |
|---|---|
| SYNDROMES | Man page |
| all_enrichment | Man page Source code |
| analyse_inherited_enrichment | Man page Source code |
| biallelic_func_enrichment | Man page Source code |
| biallelic_lof_enrichment | Man page Source code |
| biallelic_syn_enrichment | Man page Source code |
| calculate_gene_similarity | Man page Source code |
| calculate_no_match | Man page Source code |
| calculate_proband_similarity | Man page Source code |
| calculate_syndrome_rates | Man page Source code |
| check_autozygosity_in_chrom | Man page Source code |
| check_for_last_base_in_exon | Man page Source code |
| check_sample_autozygosity_genome_wide | Man page Source code |
| convert_genotypes | Man page Source code |
| cumulative_frequency | Man page Source code |
| enrichment_multiple_populations | Man page Source code |
| enrichment_single_population | Man page Source code |
| filter_exac_variants_by_cadd | Man page Source code |
| find_file_pos | Man page Source code |
| gencode | Man page |
| get_count_combinations | Man page Source code |
| get_cumulative_frequencies | Man page Source code |
| get_ddd_cohort | Man page Source code |
| get_ddd_variants_for_gene | Man page Source code |
| get_ddd_vep_annotations | Man page Source code |
| get_exac_variants_for_gene | Man page Source code |
| get_exon_ends | Man page Source code |
| get_gene_coordinates | Man page Source code |
| get_gene_ids_for_hgnc | Man page Source code |
| get_hemizygous | Man page Source code |
| get_lines_from_vep_vcf | Man page Source code |
| get_list_of_population_frequencies | Man page Source code |
| get_most_severe_consequence | Man page Source code |
| get_polyphen | Man page Source code |
| get_transcript_ids_for_ensembl_gene_ids | Man page Source code |
| lof_func_enrichment | Man page Source code |
| open_suspected_syndromes | Man page Source code |
| parse_vep_output | Man page Source code |
| permute_probands | Man page Source code |
| recessiveStats | Man page |
| recessiveStats-package | Man page |
| reformat_chrX_genotypes | Man page Source code |
| remove_easy_nonfunctional | Man page Source code |
| remove_high_frequency_vars | Man page Source code |
| remove_nonfunctional_variants | Man page Source code |
| request_from_ensembl | Man page Source code |
| set_exac_path | Man page Source code |
| standardise_multiple_alt_variants | Man page Source code |
| sum_combo_tests | Man page Source code |
| tally_alleles | Man page Source code |
| test_gene | Man page Source code |
