check_autozygosity_in_chrom: identify chromosomal regions where a proband has...
In jeremymcrae/recessiveStats: Enrichment of recessive variants within genes
Description
Usage
Arguments
Value
View source: R/calculate_autozygosity.R
Description
identify chromosomal regions where a proband has runs-of-homozygosity
Usage
1
check_autozygosity_in_chrom(bcf_path, proband, chrom, map)
Arguments
bcf_path
path to a BCF for the full genome across all probands
proband
ID for the proband to analyse
chrom
chromosome to analyse
map
genetic recombination map for the given chromosome
Value
dataframe of proband ID, chromosome, start and end coordinates.
jeremymcrae/recessiveStats documentation built on May 19, 2019, 5:08 a.m.
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Description Usage Arguments Value
View source: R/calculate_autozygosity.R
Description
identify chromosomal regions where a proband has runs-of-homozygosity
Usage
1 | check_autozygosity_in_chrom(bcf_path, proband, chrom, map)
|
Arguments
bcf_path |
path to a BCF for the full genome across all probands |
proband |
ID for the proband to analyse |
chrom |
chromosome to analyse |
map |
genetic recombination map for the given chromosome |
Value
dataframe of proband ID, chromosome, start and end coordinates.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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