check_autozygosity_in_chrom: identify chromosomal regions where a proband has...

Description Usage Arguments Value

View source: R/calculate_autozygosity.R

Description

identify chromosomal regions where a proband has runs-of-homozygosity

Usage

1
check_autozygosity_in_chrom(bcf_path, proband, chrom, map)

Arguments

bcf_path

path to a BCF for the full genome across all probands

proband

ID for the proband to analyse

chrom

chromosome to analyse

map

genetic recombination map for the given chromosome

Value

dataframe of proband ID, chromosome, start and end coordinates.


jeremymcrae/recessiveStats documentation built on May 17, 2017, 6:09 p.m.