README.md

In jrboyd/seqsetvis: Set Based Visualizations for Next-Gen Sequencing Data

See the vignette for an overview of most common functions and usage examples.

Installation

From Bioconductor

```{r bioc install, eval=FALSE}

try http:// if https:// URLs are not supported

if (!requireNamespace("BiocManager", quietly=TRUE)) install.packages("BiocManager") BiocManager::install("seqsetvis")

## From github
One dependency from bioconductor isn't getting installed automatically
```{r bioC missed dependency, eval=FALSE}
if (!requireNamespace("BiocManager", quietly=TRUE))
    install.packages("BiocManager")
BiocManager::install("GenomeInfoDbData")

Install devtools if needed ```{r devtools check, eval=FALSE} if(!require(devtools)){ install.packages("devtools") }

Install *seqsetvis* from github
```{r install seqsetvis from github, eval=FALSE}
devtools::install_github("jrboyd/seqsetvis")

jrboyd/seqsetvis documentation built on March 17, 2024, 3:14 p.m.