CTCF_in_10a_profiles_dt: Profiles for 100 randomly selected regions from overlapping...
In jrboyd/seqsetvis: Set Based Visualizations for Next-Gen Sequencing Data
CTCF_in_10a_profiles_dt R Documentation
Profiles for 100 randomly selected regions from overlapping CTCF peaks in
10a cell ChIP-seq
Results from fetching bigwigs with CTCF_in_10a_overlaps_gr.
Description
A tidy data.table at window size 50 bp within 350 bp of peak center
The variables are as follows:
Format
A tidy data.table of 2100 rows and 9 columns
Details
part of CTCF_in_10a_data
seqnames. chromosome for GRanges compatibility
start. start of interval
end. end of interval
width. width of interval
strand. leftover from GRanges.
id. unique identifier
y. fold-enrichment over input.
x. bp relative to center
sample. name of originating sample
jrboyd/seqsetvis documentation built on June 1, 2024, 5:39 a.m.
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| CTCF_in_10a_profiles_dt | R Documentation |
Profiles for 100 randomly selected regions from overlapping CTCF peaks in 10a cell ChIP-seq Results from fetching bigwigs with CTCF_in_10a_overlaps_gr.
Description
A tidy data.table at window size 50 bp within 350 bp of peak center The variables are as follows:
Format
A tidy data.table of 2100 rows and 9 columns
Details
part of CTCF_in_10a_data
seqnames. chromosome for GRanges compatibility
start. start of interval
end. end of interval
width. width of interval
strand. leftover from GRanges.
id. unique identifier
y. fold-enrichment over input.
x. bp relative to center
sample. name of originating sample
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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