dot-rm_dupesPE: Remove duplicate paired-end reads based on start and end...

.rm_dupesPER Documentation

Remove duplicate paired-end reads based on start and end position. This is an over-simplification. For better duplicate handling, duplicates must be marked in bam and flag passed to fetchBamPE() ... for ScanBamParam

Description

flag = scanBamFlag(isDuplicate = FALSE)

Usage

.rm_dupesPE(reads_dt, max_dupes)

Arguments

reads_dt

data.table of reads as loaded by fetchBamPE

max_dupes

maximum allowed positional duplicates

Value

reads_dt with duplicated reads over max_dupes removed


jrboyd/seqsetvis documentation built on March 17, 2024, 3:14 p.m.