API for jrboyd/seqsetvis
Set Based Visualizations for Next-Gen Sequencing Data

Global functions
.expand_cigar_dt Man page
.expand_cigar_dt_recursive Man page
.rm_dupes Man page
CTCF_in_10a_bigWig_urls Man page
CTCF_in_10a_data Man page
CTCF_in_10a_narrowPeak_grs Man page
CTCF_in_10a_narrowPeak_urls Man page
CTCF_in_10a_overlaps_gr Man page
CTCF_in_10a_profiles_dt Man page
CTCF_in_10a_profiles_gr Man page
add_cluster_annotation Source code
applySpline Man page Source code
centerAtMax Man page Source code
centerFixedSizeGRanges Man page Source code
chromHMM_demo_bw_states_gr Man page
chromHMM_demo_chain_url Man page
chromHMM_demo_data Man page
chromHMM_demo_overlaps_gr Man page
chromHMM_demo_segmentation_url Man page
chromHMM_demo_state_colors Man page
chromHMM_demo_state_total_widths Man page
clusteringKmeans Man page Source code
clusteringKmeansNestedHclust Man page Source code
col2hex Man page Source code
easyLoad_bed Man page Source code
easyLoad_broadPeak Man page Source code
easyLoad_narrowPeak Man page Source code
expand_cigar_dt Source code
expand_cigar_dt_recursive Source code
fetchBam Man page Source code
fixGRangesWidth Man page Source code
fragLen_calcStranded Man page Source code
fragLen_fromMacs2Xls Man page Source code
ggellipse Man page Source code
movingAverage Source code
prepare_fetch_GRanges Man page Source code
quantileGRangesWidth Man page Source code
rm_dupes Source code
safeBrew Man page Source code
seqsetvis Man page
seqsetvis-package Man page
setGRangesWidth Man page Source code
set_list2memb Man page Source code
shift_anchor Man page Source code
ssvFactorizeMembTable Man page Source code
ssvFeatureBars Man page Source code
ssvFeatureBinaryHeatmap Man page Source code
ssvFeatureEuler Man page Source code
ssvFeaturePie Man page Source code
ssvFeatureVenn Man page Source code
ssvFetchBam Man page Source code
ssvFetchBam.single Man page Source code
ssvFetchBigwig Man page Source code
ssvFetchBigwig.single Man page Source code
ssvFetchSignal Man page Source code
ssvMakeMembTable Man page
ssvMakeMembTable,DataFrame-method Man page
ssvMakeMembTable,GRanges-method Man page
ssvMakeMembTable,GRangesList-method Man page
ssvMakeMembTable,data.frame-method Man page
ssvMakeMembTable,list-method Man page
ssvMakeMembTable,matrix-method Man page
ssvOverlapIntervalSets Man page Source code
ssvSignalBandedQuantiles Man page Source code
ssvSignalClustering Man page Source code
ssvSignalHeatmap Man page Source code
ssvSignalLineplot Man page Source code
ssvSignalLineplotAgg Man page Source code
ssvSignalScatterplot Man page Source code
viewGRangesWinSample_dt Man page Source code
viewGRangesWinSummary_dt Man page Source code
jrboyd/seqsetvis documentation built on Aug. 31, 2018, 4:24 a.m.