chromHMM_demo_overlaps_gr: overlap of MCF10A CTCF with MCF7 chromHMM states, hg38.
In jrboyd/seqsetvis: Set Based Visualizations for Next-Gen Sequencing Data
chromHMM_demo_overlaps_gr R Documentation
overlap of MCF10A CTCF with MCF7 chromHMM states, hg38.
Description
overlap of MCF10A CTCF with MCF7 chromHMM states, hg38.
Format
a GRanges object of length 98
with 10 logical metadata columns, 1 per state.
Details
part of chromHMM_demo_data
the result of ssvOverlapIntervalSets() on MCF10A CTCF peaks and
MCF7 chromHMM states with use_first = TRUE
first (the MCF10A peaks) and no_hit columns have been removed
each remaining column represents MCF10A peaks overlapping with a state.
Value
a GRanges object of length 98
with 10 logical metadata columns, 1 per state.
jrboyd/seqsetvis documentation built on Dec. 10, 2024, 11:23 a.m.
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| chromHMM_demo_overlaps_gr | R Documentation |
overlap of MCF10A CTCF with MCF7 chromHMM states, hg38.
Description
overlap of MCF10A CTCF with MCF7 chromHMM states, hg38.
Format
a GRanges object of length 98 with 10 logical metadata columns, 1 per state.
Details
part of chromHMM_demo_data
the result of ssvOverlapIntervalSets() on MCF10A CTCF peaks and MCF7 chromHMM states with use_first = TRUE
first (the MCF10A peaks) and no_hit columns have been removed each remaining column represents MCF10A peaks overlapping with a state.
Value
a GRanges object of length 98 with 10 logical metadata columns, 1 per state.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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