dot-rm_dupes: Remove duplicate reads based on stranded start position....
In jrboyd/seqsetvis: Set Based Visualizations for Next-Gen Sequencing Data
.rm_dupes R Documentation
Remove duplicate reads based on stranded start position. This is an
over-simplification. For better duplicate handling, duplicates must be
marked in bam and flag passed to fetchBam() ... for ScanBamParam
Description
flag = scanBamFlag(isDuplicate = FALSE)
Usage
.rm_dupes(reads_dt, max_dupes)
Arguments
reads_dt
data.table of reads as loaded by fetchBam
max_dupes
maximum allowed positional duplicates
Value
reads_dt with duplicated reads over max_dupes removed
jrboyd/seqsetvis documentation built on Dec. 10, 2024, 11:23 a.m.
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| .rm_dupes | R Documentation |
Remove duplicate reads based on stranded start position. This is an over-simplification. For better duplicate handling, duplicates must be marked in bam and flag passed to fetchBam() ... for ScanBamParam
Description
flag = scanBamFlag(isDuplicate = FALSE)
Usage
.rm_dupes(reads_dt, max_dupes)
Arguments
reads_dt |
data.table of reads as loaded by fetchBam |
max_dupes |
maximum allowed positional duplicates |
Value
reads_dt with duplicated reads over max_dupes removed
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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